Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QYT29_RS12610 Genome accession   NZ_CP129560
Coordinates   2536046..2536786 (+) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 727M     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2531046..2541786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS12585 (QYT29_12565) yhaM 2531465..2532406 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  QYT29_RS12590 (QYT29_12570) - 2532527..2533489 (-) 963 WP_000782119.1 foldase protein PrsA -
  QYT29_RS12595 (QYT29_12575) - 2533694..2534251 (-) 558 WP_000477959.1 DUF3267 domain-containing protein -
  QYT29_RS12600 (QYT29_12580) - 2534983..2535348 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  QYT29_RS12605 (QYT29_12585) - 2535490..2535912 (-) 423 WP_000004984.1 HIT family protein -
  QYT29_RS12610 (QYT29_12590) pptA 2536046..2536786 (+) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  QYT29_RS12615 (QYT29_12595) ecsB 2536779..2538002 (+) 1224 WP_001245751.1 ABC transporter permease EcsB -
  QYT29_RS12620 (QYT29_12600) traP 2538126..2538629 (-) 504 WP_000737983.1 signal transduction protein TRAP -
  QYT29_RS12625 (QYT29_12605) - 2538815..2538901 (+) 87 WP_031875110.1 hypothetical protein -
  QYT29_RS12630 (QYT29_12610) hemE 2538891..2539928 (+) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  QYT29_RS12635 (QYT29_12615) hemH 2539985..2540908 (+) 924 WP_000162876.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=780426 QYT29_RS12610 WP_000216874.1 2536046..2536786(+) (pptA) [Staphylococcus aureus strain 727M]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=780426 QYT29_RS12610 WP_000216874.1 2536046..2536786(+) (pptA) [Staphylococcus aureus strain 727M]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGACATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGTCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCGACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545