Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PNF30_RS04410 Genome accession   NZ_CP116774
Coordinates   892593..893234 (+) Length   213 a.a.
NCBI ID   WP_095409464.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 887593..898234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS04385 (PNF30_04385) - 887967..888323 (-) 357 WP_272510765.1 inner spore coat protein -
  PNF30_RS04390 (PNF30_04390) degQ 888829..888969 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  PNF30_RS04395 (PNF30_04395) - 889121..890044 (+) 924 WP_203128792.1 polyprenyl synthetase family protein -
  PNF30_RS04400 (PNF30_04400) comX 890022..890192 (+) 171 WP_012011107.1 competence pheromone ComX -
  PNF30_RS04405 (PNF30_04405) comP 890206..892512 (+) 2307 WP_272510766.1 ATP-binding protein Regulator
  PNF30_RS04410 (PNF30_04410) comA 892593..893234 (+) 642 WP_095409464.1 response regulator transcription factor Regulator
  PNF30_RS04415 (PNF30_04415) - 893258..893647 (+) 390 WP_272510767.1 hotdog fold thioesterase -
  PNF30_RS04420 (PNF30_04420) mnhG 893752..894126 (-) 375 WP_144472360.1 monovalent cation/H(+) antiporter subunit G -
  PNF30_RS04425 (PNF30_04425) - 894110..894391 (-) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  PNF30_RS04430 (PNF30_04430) - 894391..894870 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  PNF30_RS04435 (PNF30_04435) - 894877..896355 (-) 1479 WP_197197729.1 Na+/H+ antiporter subunit D -
  PNF30_RS04440 (PNF30_04440) - 896348..896689 (-) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  PNF30_RS04445 (PNF30_04445) - 896689..897120 (-) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5634

>NTDB_id=780165 PNF30_RS04410 WP_095409464.1 892593..893234(+) (comA) [Bacillus safensis strain SRCM125915]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=780165 PNF30_RS04410 WP_095409464.1 892593..893234(+) (comA) [Bacillus safensis strain SRCM125915]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGAAACCAACCAGCAAGTAAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGACCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723