Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   PNF30_RS04405 Genome accession   NZ_CP116774
Coordinates   890206..892512 (+) Length   768 a.a.
NCBI ID   WP_272510766.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 885206..897512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS04380 (PNF30_04380) - 886707..887933 (+) 1227 WP_272511014.1 EAL and HDOD domain-containing protein -
  PNF30_RS04385 (PNF30_04385) - 887967..888323 (-) 357 WP_272510765.1 inner spore coat protein -
  PNF30_RS04390 (PNF30_04390) degQ 888829..888969 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  PNF30_RS04395 (PNF30_04395) - 889121..890044 (+) 924 WP_203128792.1 polyprenyl synthetase family protein -
  PNF30_RS04400 (PNF30_04400) comX 890022..890192 (+) 171 WP_012011107.1 competence pheromone ComX -
  PNF30_RS04405 (PNF30_04405) comP 890206..892512 (+) 2307 WP_272510766.1 ATP-binding protein Regulator
  PNF30_RS04410 (PNF30_04410) comA 892593..893234 (+) 642 WP_095409464.1 response regulator transcription factor Regulator
  PNF30_RS04415 (PNF30_04415) - 893258..893647 (+) 390 WP_272510767.1 hotdog fold thioesterase -
  PNF30_RS04420 (PNF30_04420) mnhG 893752..894126 (-) 375 WP_144472360.1 monovalent cation/H(+) antiporter subunit G -
  PNF30_RS04425 (PNF30_04425) - 894110..894391 (-) 282 WP_039181117.1 Na(+)/H(+) antiporter subunit F1 -
  PNF30_RS04430 (PNF30_04430) - 894391..894870 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  PNF30_RS04435 (PNF30_04435) - 894877..896355 (-) 1479 WP_197197729.1 Na+/H+ antiporter subunit D -
  PNF30_RS04440 (PNF30_04440) - 896348..896689 (-) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  PNF30_RS04445 (PNF30_04445) - 896689..897120 (-) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -

Sequence


Protein


Download         Length: 768 a.a.        Molecular weight: 88510.17 Da        Isoelectric Point: 8.4493

>NTDB_id=780164 PNF30_RS04405 WP_272510766.1 890206..892512(+) (comP) [Bacillus safensis strain SRCM125915]
MRKLYSKLTVILVILSFIYVIYISYINVFNIFVGAAVKENSHGQLEVVDVDNFTDSYLAGVRKGDIILEVNGNKKPVEEV
KRGFLANVKSLVVDRHGDKIDLENVRLLSQANLFIYLIPVILYSICLFCIFMILKMNKANQKKSAYILALFLLAVSIGYV
SSGGSGKGEAISRILVIVTMNSVPPLYMHFMYQYLKELGTEIIRRRVLFYLYLVPVTNVLLVLFYKNKAGPVDLLAYVNL
LSFFVLAFLSIIITIRAAKKLKDNEVGNVLRAFALILISSFSPFMLFFIIPYFFGIYFISPYVVASFVLLIPFFLVYQFM
SNKLYNVDFFMGRIKYYGFLAITPTILVVVIFDFLQKPNANFYTVKFTIITYILMLTVFYFKEIIDFRFRLKRFSEKHNY
QDSVFKFTQLIREASSLHQVLYHLKYIILEVLVVNKAFVLEVKADGQIVEIDESIEESQLWKDYVDQFQDILGEVGKIIA
LDKGFMMKIGERGGHSFVICCLSNLRTPKLTRDEISWLKTLAFYTSVSLENVVKIEELMEHLDDLKQREANPAWLKKIMF
AMEEKQRSDLARDLHDSVLQDLISLKRQSEMFLTNFQNNQCPTSIENSLVSWNDQMSKVIQTTRETCHELRPQLLYDLGL
VKAISKLTSQIQEEAPFHIRLNTTRFDKELDIDIDSQLNIYRIVQELLSNALKHSQATQVLVMLICIKDQVVLHYEDDGV
GFDASHLDQHTMSMGLSGIRERVKALNGKLQIHTAPEKGLKVKIEMEL

Nucleotide


Download         Length: 2307 bp        

>NTDB_id=780164 PNF30_RS04405 WP_272510766.1 890206..892512(+) (comP) [Bacillus safensis strain SRCM125915]
ATGAGAAAGTTATACTCTAAGTTAACAGTTATATTAGTAATCCTTAGCTTCATCTATGTGATTTACATCTCTTATATCAA
CGTATTTAATATTTTTGTTGGAGCAGCTGTTAAGGAAAATAGTCACGGTCAACTTGAGGTAGTGGATGTCGATAATTTTA
CAGATAGCTATCTAGCTGGAGTTAGGAAAGGCGATATCATACTTGAAGTAAATGGGAATAAAAAACCAGTTGAAGAAGTT
AAAAGAGGTTTTTTAGCTAATGTTAAAAGTTTAGTCGTTGATAGACATGGTGATAAAATTGATTTAGAGAATGTAAGGTT
ATTGAGTCAAGCGAATCTGTTTATTTATCTAATACCAGTCATTCTTTATTCCATCTGTCTATTTTGTATATTTATGATTT
TAAAAATGAATAAAGCAAACCAAAAAAAGTCAGCTTATATTTTAGCTTTATTTCTTTTGGCGGTGTCTATAGGTTATGTA
AGTTCTGGTGGTTCTGGAAAAGGAGAGGCTATCAGTCGTATTCTTGTAATCGTTACAATGAATAGTGTACCTCCACTATA
TATGCACTTTATGTATCAATATTTAAAAGAATTAGGAACAGAAATTATTCGTCGTCGAGTTCTTTTTTATTTGTATCTAG
TTCCAGTTACTAACGTTTTATTAGTTTTATTCTATAAAAATAAAGCAGGACCAGTAGATCTATTAGCATATGTCAATTTA
CTTTCATTTTTTGTTCTGGCTTTCCTTTCGATTATTATCACAATAAGGGCTGCTAAAAAATTGAAAGACAATGAAGTCGG
CAATGTACTTCGAGCATTTGCACTCATTTTAATCTCATCATTCAGTCCATTCATGCTATTTTTTATCATTCCTTATTTTT
TTGGTATATATTTTATTTCACCTTATGTTGTTGCATCGTTTGTTCTTTTAATTCCTTTTTTCCTAGTCTATCAATTTATG
TCAAATAAGCTGTATAATGTTGATTTCTTTATGGGGAGGATTAAATACTACGGTTTTTTAGCGATTACACCAACAATACT
AGTGGTTGTTATTTTTGATTTTCTTCAAAAACCGAATGCAAATTTCTATACAGTGAAATTTACGATCATCACGTACATTC
TTATGCTCACCGTTTTCTACTTTAAAGAAATTATCGATTTCCGCTTTCGTTTGAAGCGTTTTTCAGAGAAGCATAATTAT
CAGGATAGTGTATTTAAATTTACACAGCTCATTCGCGAGGCGTCATCACTTCATCAAGTATTGTATCATTTAAAATACAT
CATCTTAGAAGTACTTGTTGTGAACAAAGCCTTTGTGCTTGAAGTGAAGGCAGATGGACAAATTGTTGAAATTGATGAAT
CAATAGAAGAAAGCCAGCTATGGAAAGATTATGTGGATCAATTTCAAGATATTTTAGGTGAAGTTGGTAAAATCATCGCG
CTTGATAAAGGGTTTATGATGAAAATTGGTGAGCGGGGCGGTCACTCTTTTGTGATTTGCTGTTTATCTAATTTACGGAC
ACCGAAATTGACACGTGATGAGATTTCTTGGTTGAAAACATTGGCCTTTTATACAAGTGTCAGTTTAGAAAATGTCGTCA
AGATCGAAGAATTGATGGAGCATCTTGACGATTTAAAACAGCGTGAAGCCAATCCTGCCTGGCTGAAGAAAATCATGTTT
GCCATGGAAGAAAAGCAGCGCTCAGATTTAGCGAGGGATCTTCATGATTCCGTGCTGCAGGACTTGATATCACTAAAAAG
GCAGTCAGAGATGTTTTTAACGAATTTCCAAAACAACCAATGCCCAACATCCATTGAAAATTCGCTTGTCTCATGGAACG
ATCAAATGTCTAAAGTGATTCAGACGACGAGAGAAACGTGTCATGAGCTTCGGCCGCAGCTGCTGTATGATTTAGGTTTA
GTAAAGGCGATATCGAAGCTGACATCTCAAATTCAAGAGGAAGCACCGTTTCATATAAGGCTGAATACGACACGCTTTGA
TAAAGAGCTGGACATTGATATTGATTCACAGCTGAATATTTACCGAATTGTCCAGGAACTGTTATCCAATGCCCTGAAGC
ACTCCCAAGCTACTCAAGTGTTAGTGATGCTGATTTGTATTAAAGATCAGGTTGTTCTTCACTATGAGGATGATGGAGTC
GGTTTTGATGCAAGTCATCTTGATCAGCACACAATGAGCATGGGGCTATCGGGAATTAGGGAACGAGTCAAAGCGTTAAA
TGGAAAGCTTCAAATTCACACAGCACCGGAAAAAGGGCTTAAGGTGAAAATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

49.421

100

0.5