Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PNF29_RS19285 Genome accession   NZ_CP116773
Coordinates   3632491..3633639 (-) Length   382 a.a.
NCBI ID   WP_015252823.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM125727     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627491..3638639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS19255 (PNF29_19255) yclO 3628209..3629156 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  PNF29_RS19260 (PNF29_19260) ceuB 3629149..3630099 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  PNF29_RS19265 (PNF29_19265) thrD 3630484..3631848 (+) 1365 WP_041340152.1 aspartate kinase -
  PNF29_RS19270 (PNF29_19270) yczN 3632001..3632114 (+) 114 WP_272515747.1 YjcZ family sporulation protein -
  PNF29_RS19275 (PNF29_19275) yczM 3632196..3632285 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  PNF29_RS19280 (PNF29_19280) phrC 3632385..3632507 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  PNF29_RS19285 (PNF29_19285) rapC 3632491..3633639 (-) 1149 WP_015252823.1 response regulator aspartate phosphatase RapC Regulator
  PNF29_RS19290 (PNF29_19290) yclK 3633802..3635223 (-) 1422 WP_072557076.1 two-component system sensor histidine kinase YclK -
  PNF29_RS19295 (PNF29_19295) yclJ 3635210..3635893 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  PNF29_RS19300 (PNF29_19300) yclI 3636106..3637566 (+) 1461 WP_272515748.1 ABC transporter permease -
  PNF29_RS19305 (PNF29_19305) yclH 3637582..3638262 (+) 681 WP_015382762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45677.71 Da        Isoelectric Point: 5.0423

>NTDB_id=780142 PNF29_RS19285 WP_015252823.1 3632491..3633639(-) (rapC) [Bacillus subtilis strain SRCM125727]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=780142 PNF29_RS19285 WP_015252823.1 3632491..3633639(-) (rapC) [Bacillus subtilis strain SRCM125727]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAATTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACTTTTGAAAGCAGCAGGATCGTCAATTCACTGCCGCAAGCATACTT
CTTAATTACCTTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACCTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.476

100

0.995
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568