Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PNF29_RS09005 Genome accession   NZ_CP116773
Coordinates   1704235..1704570 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM125727     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699235..1709570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS08955 (PNF29_08955) comGC 1699255..1699551 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  PNF29_RS08960 (PNF29_08960) comGD 1699541..1699972 (+) 432 WP_017696194.1 competence type IV pilus minor pilin ComGD Machinery gene
  PNF29_RS08965 (PNF29_08965) comGE 1699956..1700303 (+) 348 WP_017696195.1 competence type IV pilus minor pilin ComGE Machinery gene
  PNF29_RS08970 (PNF29_08970) comGF 1700329..1700712 (+) 384 WP_017696196.1 ComG operon protein ComGF Machinery gene
  PNF29_RS08975 (PNF29_08975) comGG 1700713..1701087 (+) 375 WP_017696197.1 ComG operon protein ComGG Machinery gene
  PNF29_RS08980 (PNF29_08980) spoIITA 1701158..1701337 (+) 180 WP_014480252.1 YqzE family protein -
  PNF29_RS08985 (PNF29_08985) yqzG 1701379..1701705 (-) 327 WP_026113671.1 YqzG/YhdC family protein -
  PNF29_RS08990 (PNF29_08990) tapA 1701976..1702737 (+) 762 WP_029317916.1 amyloid fiber anchoring/assembly protein TapA -
  PNF29_RS08995 (PNF29_08995) sipW 1702721..1703293 (+) 573 WP_003230181.1 signal peptidase I SipW -
  PNF29_RS09000 (PNF29_09000) tasA 1703357..1704142 (+) 786 WP_003230183.1 biofilm matrix protein TasA -
  PNF29_RS09005 (PNF29_09005) sinR 1704235..1704570 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PNF29_RS09010 (PNF29_09010) sinI 1704604..1704777 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  PNF29_RS09015 (PNF29_09015) yqhG 1704960..1705754 (-) 795 WP_017696202.1 YqhG family protein -
  PNF29_RS09020 (PNF29_09020) hepAA 1705775..1707448 (-) 1674 WP_272516116.1 DEAD/DEAH box helicase -
  PNF29_RS09025 (PNF29_09025) gcvT 1707889..1708977 (+) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=780110 PNF29_RS09005 WP_003226345.1 1704235..1704570(-) (sinR) [Bacillus subtilis strain SRCM125727]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=780110 PNF29_RS09005 WP_003226345.1 1704235..1704570(-) (sinR) [Bacillus subtilis strain SRCM125727]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1