Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PNF29_RS03005 Genome accession   NZ_CP116773
Coordinates   576304..576993 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM125727     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 571304..581993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF29_RS02985 (PNF29_02985) tagO 571867..572943 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  PNF29_RS02990 (PNF29_02990) tagV 573016..574194 (-) 1179 WP_272515925.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PNF29_RS02995 (PNF29_02995) yvyE 574194..574847 (-) 654 WP_003227979.1 YigZ family protein -
  PNF29_RS03000 (PNF29_03000) degS 575064..576221 (+) 1158 WP_272515926.1 two-component sensor histidine kinase DegS Regulator
  PNF29_RS03005 (PNF29_03005) degU 576304..576993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PNF29_RS03010 (PNF29_03010) fakBA 577091..577936 (+) 846 WP_272515927.1 DegV family protein -
  PNF29_RS03015 (PNF29_03015) comFA 578042..579433 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  PNF29_RS03020 (PNF29_03020) comFB 579493..579789 (+) 297 WP_003227989.1 late competence protein ComFB -
  PNF29_RS03025 (PNF29_03025) comFC 579753..580475 (+) 723 WP_129137967.1 comF operon protein ComFC Machinery gene
  PNF29_RS03030 (PNF29_03030) yvyF 580549..580968 (+) 420 WP_041351272.1 TIGR03826 family flagellar region protein -
  PNF29_RS03035 (PNF29_03035) flgM 581049..581315 (+) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  PNF29_RS03040 (PNF29_03040) flgN 581331..581813 (+) 483 WP_041351273.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=780083 PNF29_RS03005 WP_003219701.1 576304..576993(+) (degU) [Bacillus subtilis strain SRCM125727]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=780083 PNF29_RS03005 WP_003219701.1 576304..576993(+) (degU) [Bacillus subtilis strain SRCM125727]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1