Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   PND17_RS09115 Genome accession   NZ_CP116772
Coordinates   1740578..1742575 (-) Length   665 a.a.
NCBI ID   WP_272591621.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735578..1747575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS09100 (PND17_09100) - 1736182..1738335 (+) 2154 WP_271298486.1 heavy metal translocating P-type ATPase -
  PND17_RS09105 (PND17_09105) - 1738708..1739163 (+) 456 WP_263604565.1 hypothetical protein -
  PND17_RS09110 (PND17_09110) - 1739157..1740347 (+) 1191 WP_271298487.1 SAM-dependent methyltransferase -
  PND17_RS09115 (PND17_09115) amiA3 1740578..1742575 (-) 1998 WP_272591621.1 peptide ABC transporter substrate-binding protein Regulator
  PND17_RS10190 - 1742809..1742964 (-) 156 WP_418953171.1 hypothetical protein -
  PND17_RS09120 (PND17_09120) - 1742930..1743244 (-) 315 Protein_1778 TatD family hydrolase -
  PND17_RS09125 (PND17_09125) - 1743590..1744795 (+) 1206 WP_271298329.1 OFA family MFS transporter -
  PND17_RS09130 (PND17_09130) tnpA 1745010..1745234 (+) 225 Protein_1780 IS200/IS605 family transposase -
  PND17_RS09135 (PND17_09135) - 1745490..1746689 (+) 1200 WP_002947150.1 phosphoglycerate kinase -
  PND17_RS09140 (PND17_09140) - 1746863..1747000 (+) 138 WP_167540729.1 hypothetical protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 73444.71 Da        Isoelectric Point: 5.1532

>NTDB_id=780073 PND17_RS09115 WP_272591621.1 1740578..1742575(-) (amiA3) [Streptococcus thermophilus strain strain TSGB 4141]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIYYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPVHLDLPVNQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
VTLNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKAFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPAISRLTPFTGASLQVGDKNSSNDYIKYVKPQEKVVTKKEYEQSREKWLLD
QFTFKEHYDKLPAVMSMWLHQRWLY

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=780073 PND17_RS09115 WP_272591621.1 1740578..1742575(-) (amiA3) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAAGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGAAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACGAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTATT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAGTTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GTAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGCTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCCTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGCTATCTCACGCTTGACACCGTTTACCGGTGCTAGCCTCCAGGTGGGTGATAAAAACTCATCAAACGACT
ACATCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTGCTTGAT
CAGTTCACTTTCAAGGAACATTATGACAAACTCCCTGCTGTTATGTCCATGTGGCTGCATCAGCGATGGTTGTATTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

99.216

95.94

0.952
  amiA3 Streptococcus thermophilus LMD-9

98.589

95.94

0.946
  amiA Streptococcus salivarius strain HSISS4

90.596

95.94

0.869