Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PJU73_RS00085 Genome accession   NZ_CP116766
Coordinates   18362..18847 (-) Length   161 a.a.
NCBI ID   WP_237090315.1    Uniprot ID   -
Organism   Neisseria lisongii strain ZJ106     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 13362..23847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU73_RS00070 (PJU73_00070) - 13456..15414 (+) 1959 WP_237090476.1 cytochrome c biogenesis protein ResB -
  PJU73_RS00075 (PJU73_00075) ccsB 15401..16594 (+) 1194 WP_237090317.1 c-type cytochrome biogenesis protein CcsB -
  PJU73_RS00080 (PJU73_00080) tsaD 16891..17967 (+) 1077 WP_237090316.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  PJU73_RS00085 (PJU73_00085) pilE 18362..18847 (-) 486 WP_237090315.1 pilin Machinery gene
  PJU73_RS00090 (PJU73_00090) aroG 19181..20224 (-) 1044 WP_237090314.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  PJU73_RS00095 (PJU73_00095) - 20574..21107 (+) 534 WP_237090313.1 isochorismatase family protein -
  PJU73_RS00100 (PJU73_00100) - 21181..21684 (+) 504 WP_237090312.1 GNAT family N-acetyltransferase -
  PJU73_RS00105 (PJU73_00105) - 21953..23197 (-) 1245 WP_237090311.1 N-acetylmuramoyl-L-alanine amidase -
  PJU73_RS00110 (PJU73_00110) tsaE 23185..23655 (-) 471 WP_237090310.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17439.00 Da        Isoelectric Point: 4.7147

>NTDB_id=779980 PJU73_RS00085 WP_237090315.1 18362..18847(-) (pilE) [Neisseria lisongii strain ZJ106]
MPTRQQGFTLIELMIVIAIVGILTLIALPVYQDKTARAQVTEAFSLAEGQKIALIEYYSDKGTFPESNAAAGVATEKEIK
GEYVESVKIEGNDTEGKIIATMKQDGVNKALQNGKLTLKIEIPKDKKADLGSFVWTCESDIDGKYLPSACRSKPAPADEG
Q

Nucleotide


Download         Length: 486 bp        

>NTDB_id=779980 PJU73_RS00085 WP_237090315.1 18362..18847(-) (pilE) [Neisseria lisongii strain ZJ106]
ATGCCTACCCGCCAACAAGGTTTCACCTTAATCGAACTGATGATTGTCATCGCCATTGTCGGCATTCTGACCCTGATTGC
CCTGCCCGTTTACCAAGACAAAACCGCCCGAGCCCAAGTTACAGAAGCCTTTTCGCTTGCCGAAGGCCAAAAAATCGCAC
TGATTGAATATTATTCGGACAAAGGCACCTTCCCAGAAAGCAATGCCGCAGCAGGCGTTGCCACAGAAAAGGAGATTAAA
GGCGAATATGTGGAAAGTGTAAAAATTGAAGGCAACGACACCGAAGGAAAAATCATTGCCACCATGAAACAAGACGGCGT
GAATAAGGCCTTACAAAACGGAAAACTCACGTTAAAAATCGAGATTCCAAAAGACAAAAAAGCCGACTTGGGTTCATTTG
TCTGGACCTGCGAAAGCGATATAGACGGCAAATACCTGCCGTCTGCCTGCCGCAGCAAACCAGCACCAGCAGATGAAGGG
CAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

48.81

100

0.509
  pilE Neisseria gonorrhoeae MS11

46.857

100

0.509
  pilA/pilA1 Eikenella corrodens VA1

38.75

99.379

0.385
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

31.915

100

0.373
  pilA Ralstonia pseudosolanacearum GMI1000

35.366

100

0.36