Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QY866_RS08890 Genome accession   NZ_CP129530
Coordinates   1760490..1762493 (-) Length   667 a.a.
NCBI ID   WP_056948816.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1755490..1767493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS08875 (QY866_08865) rapZ 1755961..1756845 (-) 885 WP_011374234.1 RNase adapter RapZ -
  QY866_RS08880 (QY866_08870) - 1756971..1757507 (-) 537 WP_056948812.1 DUF308 domain-containing protein -
  QY866_RS08885 (QY866_08875) uvrA 1757628..1760480 (-) 2853 WP_056948814.1 excinuclease ABC subunit UvrA Machinery gene
  QY866_RS08890 (QY866_08880) uvrB 1760490..1762493 (-) 2004 WP_056948816.1 excinuclease ABC subunit UvrB Machinery gene
  QY866_RS08895 (QY866_08885) - 1762701..1763333 (-) 633 WP_056948818.1 YfbR-like 5'-deoxynucleotidase -
  QY866_RS08900 (QY866_08890) - 1763458..1765182 (-) 1725 WP_011374229.1 phospho-sugar mutase -
  QY866_RS08905 (QY866_08895) trxB 1765338..1766258 (-) 921 WP_011374228.1 thioredoxin-disulfide reductase -
  QY866_RS08910 (QY866_08900) - 1766374..1766721 (-) 348 WP_099712946.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 76348.62 Da        Isoelectric Point: 4.5928

>NTDB_id=779915 QY866_RS08890 WP_056948816.1 1760490..1762493(-) (uvrB) [Latilactobacillus sakei strain A1262]
MIDRQNDNLFDLVAPYEPAGDQPAAIETLTKNFEAGAKAQVLMGATGTGKTFTMSNVIKNLNKPTLIISHNKTLAGQLYA
EFKQFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIDKLRHSATSSLLERNDVIVVASVSCIFGLGDPREYQ
NHVLSLRPGMEVERNDLLRQLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDDHALRVEFFGDEIDRIVEVDALTGEVI
GERSHVAIFPATHFMTNDEKMEKAIESIKAELAERLAVLKGEGKLLEAQRLEQRTNYDLEMMQEMGYCSGIENYSRHMED
RQAGEPPYTLLDFFPKDSIMMIDESHVTMPQIRGMYNGDRARKQMLIDYGFRLPSALDNRPLTLPEFEEHVNEIMYVSAT
PGPYEAEQTDIQVDQIIRPTGLLDPNIEVRPIMGQIDDLVGEINDRIEKNERVFITTLTKKMSEDLTDYLKELGIKVRYL
HSDVKTLERTEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSERSLIQTIGRASRNENGQVLLYADK
ITDSMRHAIDETKRRRTIQEEYNAAHNITPKTIIKPIRDAISMVQSVEHPEEIKMTNEIDLENMSKAEKLEMVERLSEQM
RLAAKKLDFEQAATLRDTILELKSEID

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=779915 QY866_RS08890 WP_056948816.1 1760490..1762493(-) (uvrB) [Latilactobacillus sakei strain A1262]
ATGATTGATAGACAGAACGATAACCTATTTGACTTAGTCGCACCATATGAACCTGCTGGCGATCAACCTGCTGCAATTGA
AACCTTAACGAAGAATTTTGAGGCAGGTGCTAAGGCACAGGTCTTGATGGGCGCTACTGGGACCGGGAAAACTTTTACAA
TGTCCAACGTGATTAAGAATCTCAACAAACCAACGTTGATTATTTCGCATAATAAGACATTGGCCGGTCAACTGTACGCG
GAATTTAAGCAGTTTTTTCCTAACAATGCGGTTGAATATTTCGTGAGTTATTATGATTACTACCAACCAGAAGCCTATGT
GCCTTCCAGTGATACGTATATCGAAAAAGATTCGAGTATTAATGATGAAATCGATAAACTACGGCATTCAGCGACGAGTT
CGTTATTAGAACGCAACGATGTGATTGTTGTGGCCTCTGTTTCTTGTATCTTTGGGTTAGGGGATCCACGTGAATACCAA
AATCACGTCTTGTCACTGCGTCCAGGAATGGAAGTTGAACGTAACGACCTATTACGTCAGTTAGTTGATATTCAATTTGA
ACGTAACGATATAGATTTTCAACGGGGGCGCTTTAGAGTGCGCGGTGATGTGGTTGAAATTTTCCCAGCTTCTCGTGATG
ATCATGCGCTGCGCGTTGAATTTTTTGGCGATGAAATTGATCGAATTGTCGAAGTGGATGCTTTAACGGGTGAAGTGATT
GGTGAACGGTCACACGTTGCCATTTTCCCCGCAACGCATTTTATGACGAATGATGAAAAAATGGAAAAAGCCATTGAAAG
TATTAAAGCTGAATTGGCCGAACGGCTAGCTGTTTTAAAAGGCGAGGGTAAGTTACTAGAAGCACAACGTCTTGAACAAC
GGACAAACTATGACCTTGAAATGATGCAAGAGATGGGTTATTGTTCTGGGATTGAAAATTACTCACGCCATATGGAAGAC
CGCCAAGCCGGCGAACCGCCTTACACGTTGCTAGATTTCTTCCCAAAGGATTCCATCATGATGATTGATGAATCCCATGT
CACTATGCCCCAAATTCGGGGGATGTACAACGGTGATCGTGCGCGGAAACAAATGTTGATTGACTATGGTTTCCGGTTAC
CAAGTGCGTTAGATAACCGCCCCTTAACGTTGCCAGAATTCGAAGAGCACGTGAATGAAATTATGTATGTGTCGGCCACA
CCAGGGCCTTATGAAGCGGAACAAACCGATATTCAAGTGGATCAGATTATTCGGCCAACCGGCCTGTTGGATCCTAATAT
TGAAGTGCGACCAATCATGGGTCAGATTGATGATTTAGTCGGTGAAATCAATGATCGCATTGAAAAGAACGAACGGGTCT
TCATTACAACTTTAACCAAGAAAATGTCGGAAGATTTAACCGATTATCTCAAGGAACTGGGCATCAAAGTCCGGTACTTG
CATAGTGATGTCAAGACGTTGGAACGAACGGAAATTATCCGTGATTTACGACTGGGTAAATTCGATGTCTTAATTGGGAT
TAACTTATTACGGGAAGGAATTGATGTGCCTGAAGTGTCCTTAGTGGCAATTTTAGATGCGGATAAGGAAGGCTTCTTAC
GTAGTGAACGGTCCTTAATCCAAACCATTGGCCGGGCATCTCGTAATGAAAATGGACAAGTCTTGTTGTATGCCGATAAG
ATTACAGACTCAATGCGCCACGCAATTGATGAGACTAAACGTCGACGGACAATTCAAGAAGAATATAATGCCGCCCACAA
TATCACACCGAAGACGATTATTAAACCAATTCGGGATGCAATTTCAATGGTACAATCGGTTGAACATCCAGAAGAAATTA
AGATGACCAATGAGATTGATTTAGAGAACATGTCGAAGGCTGAAAAACTAGAAATGGTTGAACGACTATCCGAACAGATG
CGCTTAGCAGCTAAGAAACTTGATTTTGAACAAGCGGCGACATTGCGCGATACCATTCTAGAATTAAAAAGTGAAATAGA
TTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(631-664)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae D39

72.59

99.55

0.723
  uvrB Streptococcus pneumoniae TIGR4

72.44

99.55

0.721