Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QY866_RS06610 Genome accession   NZ_CP129530
Coordinates   1322238..1322897 (+) Length   219 a.a.
NCBI ID   WP_011374681.1    Uniprot ID   Q38X00
Organism   Latilactobacillus sakei strain A1262     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317238..1327897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06590 (QY866_06580) - 1317658..1318536 (+) 879 WP_011374685.1 aldose 1-epimerase family protein -
  QY866_RS06595 (QY866_06585) alsS 1318661..1320343 (+) 1683 WP_056947616.1 acetolactate synthase AlsS -
  QY866_RS06600 (QY866_06590) budA 1320377..1321096 (+) 720 WP_056947618.1 acetolactate decarboxylase -
  QY866_RS06605 (QY866_06595) thiD 1321272..1322069 (-) 798 WP_011374682.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QY866_RS06610 (QY866_06600) comA 1322238..1322897 (+) 660 WP_011374681.1 ATP-binding cassette domain-containing protein Regulator
  QY866_RS06615 (QY866_06605) fetB 1322881..1323642 (+) 762 WP_011374680.1 iron export ABC transporter permease subunit FetB -
  QY866_RS06620 (QY866_06610) plsY 1323665..1324285 (-) 621 WP_011374679.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  QY866_RS06625 (QY866_06615) parE 1324487..1326478 (+) 1992 WP_011374678.1 DNA topoisomerase IV subunit B -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24149.60 Da        Isoelectric Point: 5.0641

>NTDB_id=779896 QY866_RS06610 WP_011374681.1 1322238..1322897(+) (comA) [Latilactobacillus sakei strain A1262]
MLQLETKGLNYSVDGQAILSDINITIEQGSYNTIVGPSGSGKSTLLRLLADLLTPTSGEILLAGQAISDYKPTQYRQRVS
YCFQQPTLFGTTVGDNLVFPFEIRELPVDETLVQTQLARVGLAEMPLTKKITTLSGGEKQRIALIRNLMFKPEILLLDEI
TTGLDEQTKSLVNGLITHLNQEDGITVLSITHDTQEQQRKGRQLQIVAGRLVHADESSR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=779896 QY866_RS06610 WP_011374681.1 1322238..1322897(+) (comA) [Latilactobacillus sakei strain A1262]
ATGCTTCAGCTAGAGACAAAGGGCCTTAATTATAGCGTTGATGGCCAAGCAATATTGAGCGATATTAATATCACAATTGA
ACAAGGGTCTTATAATACGATTGTGGGACCATCAGGGAGTGGTAAGAGTACGTTGTTACGGCTATTAGCCGATTTATTGA
CACCAACGAGTGGGGAGATTTTGTTGGCAGGACAGGCCATTAGCGACTATAAACCGACGCAATATCGGCAACGCGTGTCT
TATTGCTTCCAACAACCAACGTTATTTGGGACGACAGTTGGTGATAATCTAGTATTTCCGTTTGAAATTCGCGAATTACC
AGTGGATGAGACGCTAGTTCAGACGCAATTAGCCCGAGTTGGGTTAGCGGAGATGCCCTTGACTAAAAAGATTACAACGC
TTTCGGGGGGCGAGAAGCAACGAATTGCTTTAATTCGTAACCTGATGTTTAAACCGGAAATCCTGCTACTGGATGAAATT
ACGACCGGCCTAGATGAGCAGACTAAATCCTTGGTTAATGGGCTAATCACACATTTGAATCAAGAAGATGGGATTACGGT
CTTGTCGATTACCCATGATACACAAGAACAACAACGGAAAGGGCGTCAGCTTCAAATTGTAGCTGGTCGTTTGGTACATG
CAGATGAATCTAGCCGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38X00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

36.364

100

0.365
  comA Streptococcus pneumoniae Rx1

35.909

100

0.361
  comA Streptococcus pneumoniae D39

35.909

100

0.361
  comA Streptococcus pneumoniae R6

35.909

100

0.361
  comA Streptococcus mitis NCTC 12261

35.909

100

0.361