Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   QYM42_RS11120 Genome accession   NZ_CP129526
Coordinates   2238129..2238794 (+) Length   221 a.a.
NCBI ID   WP_251899911.1    Uniprot ID   -
Organism   Lactococcus lactis strain ZZ-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233129..2243794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS11090 (QYM42_11090) - 2234292..2234600 (-) 309 WP_251899909.1 lactococcin 972 family bacteriocin -
  QYM42_RS11095 (QYM42_11095) - 2234898..2235626 (-) 729 WP_251899910.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  QYM42_RS11100 (QYM42_11100) - 2235819..2236040 (+) 222 WP_021723106.1 YqgQ family protein -
  QYM42_RS11105 (QYM42_11105) - 2236074..2237045 (+) 972 WP_015427121.1 ROK family glucokinase -
  QYM42_RS11110 (QYM42_11110) - 2237048..2237434 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  QYM42_RS11115 (QYM42_11115) - 2237516..2237962 (-) 447 WP_301675255.1 DNA starvation/stationary phase protection protein -
  QYM42_RS11120 (QYM42_11120) cclA/cilC 2238129..2238794 (+) 666 WP_251899911.1 A24 family peptidase Machinery gene
  QYM42_RS11125 (QYM42_11125) dinB 2238745..2239839 (-) 1095 WP_023164600.1 DNA polymerase IV -
  QYM42_RS11130 (QYM42_11130) - 2239918..2240409 (-) 492 WP_010906273.1 prolyl-tRNA synthetase associated domain-containing protein -
  QYM42_RS11135 (QYM42_11135) - 2240488..2241981 (-) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  QYM42_RS11140 (QYM42_11140) - 2242173..2243303 (-) 1131 WP_251899912.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25700.92 Da        Isoelectric Point: 8.6924

>NTDB_id=779738 QYM42_RS11120 WP_251899911.1 2238129..2238794(+) (cclA/cilC) [Lactococcus lactis strain ZZ-2]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQICSGSHCRYCKSKIPYLYVFFEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=779738 QYM42_RS11120 WP_251899911.1 2238129..2238794(+) (cclA/cilC) [Lactococcus lactis strain ZZ-2]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATATGTTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTTGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae Rx1

38.14

97.285

0.371
  cclA/cilC Streptococcus pneumoniae D39

38.14

97.285

0.371
  cclA/cilC Streptococcus pneumoniae R6

38.14

97.285

0.371
  cclA/cilC Streptococcus mitis SK321

36.986

99.095

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.674

97.285

0.367