Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   QYE86_RS08710 Genome accession   NZ_CP129360
Coordinates   1755522..1756124 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain CKMM-401M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750522..1761124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE86_RS08690 yajC 1752018..1752278 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  QYE86_RS08695 tgt 1752297..1753436 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  QYE86_RS08700 queA 1753459..1754484 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  QYE86_RS08705 ruvB 1754486..1755490 (-) 1005 WP_001005768.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  QYE86_RS08710 ruvA 1755522..1756124 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  QYE86_RS08715 - 1756138..1756593 (-) 456 WP_044289971.1 ACT domain-containing protein -
  QYE86_RS08720 obgE 1756606..1757898 (-) 1293 WP_000496100.1 GTPase ObgE -
  QYE86_RS08725 rpmA 1758524..1758808 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  QYE86_RS08730 - 1758820..1759140 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  QYE86_RS08735 rplU 1759146..1759454 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  QYE86_RS08740 mreD 1759816..1760346 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=778872 QYE86_RS08710 WP_000271547.1 1755522..1756124(-) (ruvA) [Staphylococcus aureus strain CKMM-401M]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=778872 QYE86_RS08710 WP_000271547.1 1755522..1756124(-) (ruvA) [Staphylococcus aureus strain CKMM-401M]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425