Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PHA78_RS10015 Genome accession   NZ_CP116604
Coordinates   2060880..2061374 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus sp. HN38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2055880..2066374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS10000 - 2058676..2059620 (+) 945 WP_024397681.1 magnesium transporter CorA family protein -
  PHA78_RS10005 - 2059636..2060292 (+) 657 WP_029185317.1 DUF1129 domain-containing protein -
  PHA78_RS10010 rpsR 2060608..2060847 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  PHA78_RS10015 ssbA 2060880..2061374 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  PHA78_RS10020 rpsF 2061386..2061676 (-) 291 WP_024418487.1 30S ribosomal protein S6 -
  PHA78_RS10025 - 2061848..2062837 (-) 990 WP_099806612.1 lipoate--protein ligase -
  PHA78_RS10030 - 2062971..2064161 (+) 1191 WP_099806611.1 DUF6688 family protein -
  PHA78_RS10035 lpdA 2064212..2065972 (-) 1761 WP_099806610.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=778783 PHA78_RS10015 WP_002942409.1 2060880..2061374(-) (ssbA) [Streptococcus sp. HN38]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=778783 PHA78_RS10015 WP_002942409.1 2060880..2061374(-) (ssbA) [Streptococcus sp. HN38]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366