Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PHA78_RS07385 Genome accession   NZ_CP116604
Coordinates   1545941..1546744 (-) Length   267 a.a.
NCBI ID   WP_024376691.1    Uniprot ID   -
Organism   Streptococcus sp. HN38     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540941..1551744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA78_RS07370 recR 1541257..1541853 (-) 597 WP_105128095.1 recombination mediator RecR -
  PHA78_RS07375 pbp2b 1541862..1543934 (-) 2073 WP_272157910.1 penicillin-binding protein PBP2B -
  PHA78_RS07380 vga(F) 1544025..1545410 (-) 1386 WP_032500526.1 ABC-F type ribosomal protection protein Vga(F) -
  PHA78_RS07385 vicX 1545941..1546744 (-) 804 WP_024376691.1 MBL fold metallo-hydrolase Regulator
  PHA78_RS07390 micB 1546751..1548100 (-) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PHA78_RS07395 micA 1548093..1548797 (-) 705 WP_004298854.1 response regulator YycF Regulator
  PHA78_RS07400 - 1548991..1549752 (+) 762 WP_004298852.1 amino acid ABC transporter ATP-binding protein -
  PHA78_RS07405 - 1549763..1550602 (+) 840 WP_029175933.1 transporter substrate-binding domain-containing protein -
  PHA78_RS07410 - 1550617..1551315 (+) 699 WP_029185563.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29641.72 Da        Isoelectric Point: 5.7755

>NTDB_id=778773 PHA78_RS07385 WP_024376691.1 1545941..1546744(-) (vicX) [Streptococcus sp. HN38]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVILTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=778773 PHA78_RS07385 WP_024376691.1 1545941..1546744(-) (vicX) [Streptococcus sp. HN38]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACTTGGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGTGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGACATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATATTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCTTATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGATGGAGCTGACGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCCCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGACACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.528

100

0.775