Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PNR82_RS07820 Genome accession   NZ_CP116597
Coordinates   1574206..1575069 (-) Length   287 a.a.
NCBI ID   WP_243589500.1    Uniprot ID   -
Organism   Staphylococcus sp. NRL 22/194     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1569206..1580069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNR82_RS07800 xerC 1569566..1570459 (-) 894 WP_243603737.1 tyrosine recombinase XerC -
  PNR82_RS07805 trmFO 1570605..1571309 (-) 705 WP_334310888.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PNR82_RS07810 trmFO 1571227..1571913 (-) 687 WP_243589499.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PNR82_RS07815 topA 1571934..1574005 (-) 2072 Protein_1504 type I DNA topoisomerase -
  PNR82_RS07820 dprA 1574206..1575069 (-) 864 WP_243589500.1 DNA-processing protein DprA Machinery gene
  PNR82_RS07825 sucD 1575316..1576221 (-) 906 WP_243589501.1 succinate--CoA ligase subunit alpha -
  PNR82_RS07830 sucC 1576243..1577409 (-) 1167 WP_103297856.1 ADP-forming succinate--CoA ligase subunit beta -
  PNR82_RS07835 - 1577520..1578288 (-) 769 Protein_1508 ribonuclease HII -
  PNR82_RS07840 ylqF 1578272..1579157 (-) 886 Protein_1509 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32628.49 Da        Isoelectric Point: 8.7409

>NTDB_id=778716 PNR82_RS07820 WP_243589500.1 1574206..1575069(-) (dprA) [Staphylococcus sp. NRL 22/194]
MSDNEIVLLKLRWAGYSTQQIHHLLNLYPDYLSFSFRDQVDTLRTWEKLYSKKELVDRFIKININEITEQLSCHHVSFIS
SFNASYSPLLKQIYDYPLIIFYKGNVNLLSSTNTLGVVGSRVATQYSSHAMQYLFSNFTHIPLTIVSGLAKGADSLAHHY
ALKFNLPTIAVLGHGHLKHYPKETEKLRYIIEEKGLVISEYPPFINIARYHFPQRNRLISGLSKGVLITEAGIKSGSQIT
IDCAIEQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAQDILNDY

Nucleotide


Download         Length: 864 bp        

>NTDB_id=778716 PNR82_RS07820 WP_243589500.1 1574206..1575069(-) (dprA) [Staphylococcus sp. NRL 22/194]
ATGTCAGACAACGAAATAGTTTTATTGAAACTTAGATGGGCTGGGTATTCAACACAACAGATTCATCATTTATTAAACTT
GTACCCTGATTATTTAAGTTTTTCATTCAGAGATCAAGTAGATACCTTAAGAACTTGGGAAAAGCTTTACAGTAAAAAAG
AACTTGTAGATCGATTTATTAAAATTAACATCAACGAAATAACAGAACAATTATCATGCCATCATGTGAGTTTTATTTCT
TCATTTAATGCTTCGTATTCACCGCTTCTCAAGCAAATTTATGATTATCCATTGATTATATTTTATAAAGGAAATGTCAA
TTTACTCTCTTCTACCAATACTTTAGGCGTTGTAGGCTCACGTGTCGCTACTCAATATTCCTCTCATGCCATGCAATATC
TCTTCTCAAACTTCACTCATATACCTCTTACTATTGTTTCAGGACTAGCTAAAGGTGCAGATAGTTTAGCACACCATTAC
GCATTAAAATTCAATTTACCTACTATTGCAGTTTTAGGTCATGGTCATTTAAAACACTATCCCAAAGAAACTGAAAAACT
ACGATATATAATTGAAGAAAAAGGATTAGTTATTAGTGAATATCCACCATTTATAAATATTGCAAGGTATCACTTTCCAC
AACGTAATCGTCTAATTAGTGGTTTATCAAAAGGGGTTCTAATTACTGAAGCAGGTATTAAAAGCGGTAGTCAAATTACG
ATAGACTGTGCGATTGAACAAAATAGAAATGTATATGTATTACCAGGCTCTATGTTTAACCCATTAACAAAAGGAAACTT
GTTAAGAGCTCAAGAAGGAGCAATGATAGTTTCAGAAGCACAAGATATATTGAATGATTATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.594

99.652

0.554
  dprA Staphylococcus aureus N315

55.594

99.652

0.554
  dprA Lactococcus lactis subsp. cremoris KW2

36.879

98.258

0.362