Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PML84_RS03770 Genome accession   NZ_CP116587
Coordinates   788914..789414 (+) Length   166 a.a.
NCBI ID   WP_271793957.1    Uniprot ID   -
Organism   Companilactobacillus farciminis strain K68-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 783914..794414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML84_RS03730 (PML84_03730) - 784351..785388 (+) 1038 WP_271793954.1 AAA family ATPase -
  PML84_RS03735 (PML84_03735) - 785385..786041 (+) 657 WP_182082496.1 putative HNHc nuclease -
  PML84_RS03740 (PML84_03740) - 786056..786889 (+) 834 WP_010019113.1 conserved phage C-terminal domain-containing protein -
  PML84_RS03745 (PML84_03745) - 786876..787178 (+) 303 WP_010019114.1 hypothetical protein -
  PML84_RS03750 (PML84_03750) - 787165..787377 (+) 213 WP_010019115.1 helix-turn-helix domain-containing protein -
  PML84_RS03755 (PML84_03755) - 787374..787820 (+) 447 WP_010019117.1 RusA family crossover junction endodeoxyribonuclease -
  PML84_RS03760 (PML84_03760) - 787888..788649 (+) 762 WP_271793955.1 phage antirepressor KilAC domain-containing protein -
  PML84_RS03765 (PML84_03765) - 788649..788924 (+) 276 WP_271793956.1 hypothetical protein -
  PML84_RS03770 (PML84_03770) ssb 788914..789414 (+) 501 WP_271793957.1 single-stranded DNA-binding protein Machinery gene
  PML84_RS03775 (PML84_03775) - 789624..789833 (+) 210 WP_271793958.1 hypothetical protein -
  PML84_RS03780 (PML84_03780) - 790177..790629 (+) 453 WP_010019135.1 ArpU family phage packaging/lysis transcriptional regulator -
  PML84_RS03785 (PML84_03785) - 791369..791587 (+) 219 WP_010019138.1 Thoeris anti-defense Tad2 family protein -
  PML84_RS03790 (PML84_03790) - 791577..791723 (+) 147 WP_271793959.1 hypothetical protein -
  PML84_RS03795 (PML84_03795) terS 791776..792648 (+) 873 WP_271793960.1 phage terminase small subunit -
  PML84_RS03800 (PML84_03800) - 792632..793945 (+) 1314 WP_271793961.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18722.52 Da        Isoelectric Point: 6.4766

>NTDB_id=778649 PML84_RS03770 WP_271793957.1 788914..789414(+) (ssb) [Companilactobacillus farciminis strain K68-8]
MINRVVLVGRLTRDPELRYTTNGAAVANFTVAVNRTFTNSQGEREADFINCVIWKKAAENFTNFTHKGSLVGLDGRIQTR
NYENQQGQRVYVTEVVVENFSLLESRKDAENQQQNSSNTNDYSHQPPKKSRNDAVNTKSDVANSKSGDPFYNNSKPIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=778649 PML84_RS03770 WP_271793957.1 788914..789414(+) (ssb) [Companilactobacillus farciminis strain K68-8]
ATGATAAATAGAGTCGTATTAGTAGGACGTCTGACACGTGATCCAGAGTTGAGATATACAACTAATGGTGCAGCAGTTGC
CAATTTTACAGTTGCTGTAAATCGTACATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATAAATTGTGTTATTT
GGAAGAAAGCCGCTGAGAATTTCACCAATTTCACTCACAAAGGTTCACTTGTAGGGCTTGATGGACGAATTCAAACACGT
AACTACGAGAATCAGCAAGGACAGCGTGTATATGTCACTGAAGTAGTTGTTGAGAACTTCTCACTTTTGGAAAGTAGAAA
AGATGCAGAAAATCAGCAGCAAAATTCCAGTAATACCAACGACTACAGCCATCAACCGCCGAAAAAAAGTAGAAACGATG
CAGTAAACACAAAAAGTGATGTAGCAAATTCAAAGAGCGGTGATCCATTTTATAACAACAGCAAACCAATAGATATTTCA
GATGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.118

100

0.657
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.302

100

0.614
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.855

0.367