Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PML78_RS07610 Genome accession   NZ_CP116583
Coordinates   1633551..1634081 (-) Length   176 a.a.
NCBI ID   WP_016173264.1    Uniprot ID   -
Organism   Enterococcus dispar strain K205-4b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1628551..1639081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML78_RS07590 (PML78_07590) - 1629129..1629746 (+) 618 WP_271856729.1 DUF6273 domain-containing protein -
  PML78_RS07595 (PML78_07595) rplI 1629869..1630321 (-) 453 WP_016173261.1 50S ribosomal protein L9 -
  PML78_RS07600 (PML78_07600) - 1630514..1632463 (-) 1950 WP_271856731.1 DHH family phosphoesterase -
  PML78_RS07605 (PML78_07605) rpsR 1633291..1633527 (-) 237 WP_016173263.1 30S ribosomal protein S18 -
  PML78_RS07610 (PML78_07610) ssb 1633551..1634081 (-) 531 WP_016173264.1 single-stranded DNA-binding protein Machinery gene
  PML78_RS07615 (PML78_07615) rpsF 1634127..1634426 (-) 300 WP_016173265.1 30S ribosomal protein S6 -
  PML78_RS07620 (PML78_07620) - 1634744..1635676 (+) 933 WP_271856735.1 phosphotransferase -
  PML78_RS07625 (PML78_07625) gyrA 1636251..1638743 (-) 2493 WP_229084941.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19281.90 Da        Isoelectric Point: 4.5673

>NTDB_id=778626 PML78_RS07610 WP_016173264.1 1633551..1634081(-) (ssb) [Enterococcus dispar strain K205-4b]
MINNVVLVGRLTKDPDLRYTANGAAVATFTLAVNRNFTNQSGDREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRSANEQRQQGGSTTNGGGGFNNNYGGASQQNNFNQNQPSQNSGMPSFDRDTSDPF
GSDASTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=778626 PML78_RS07610 WP_016173264.1 1633551..1634081(-) (ssb) [Enterococcus dispar strain K205-4b]
TTGATTAACAATGTAGTTTTAGTCGGCAGATTAACCAAAGATCCTGATTTGCGTTATACTGCGAATGGTGCAGCAGTTGC
GACATTTACTTTAGCAGTAAATCGTAACTTCACGAACCAAAGCGGTGACCGCGAAGCAGATTTTATCAATTGTGTGATTT
GGCGTAAACCAGCCGAAACTTTAGCGAATTATGCCCGTAAAGGAACGCTGCTAGGTGTTACTGGCCGCATCCAAACACGG
AATTATGAAAACCAACAAGGTCAACGTGTTTACGTAACTGAAGTGGTTGCTGAAAACTTCCAATTATTAGAATCACGTTC
TGCAAATGAACAACGTCAACAAGGTGGGTCAACTACTAACGGTGGCGGTGGTTTCAACAATAATTACGGTGGTGCCAGCC
AACAAAACAATTTTAATCAAAACCAACCTTCTCAAAACAGCGGAATGCCGAGTTTTGATCGCGACACTTCTGATCCATTC
GGGTCTGACGCATCAACCATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.068

100

0.631
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.798

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.227

0.375