Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PML92_RS00040 | Genome accession | NZ_CP116579 |
| Coordinates | 9212..9724 (+) | Length | 170 a.a. |
| NCBI ID | WP_005875808.1 | Uniprot ID | A0A4U4EBS1 |
| Organism | Enterococcus durans strain R109-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4212..14724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PML92_RS00025 (PML92_00025) | gyrB | 4221..6167 (+) | 1947 | WP_005875803.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| PML92_RS00030 (PML92_00030) | gyrA | 6187..8688 (+) | 2502 | WP_193809267.1 | DNA gyrase subunit A | - |
| PML92_RS00035 (PML92_00035) | rpsF | 8863..9162 (+) | 300 | WP_005875806.1 | 30S ribosomal protein S6 | - |
| PML92_RS00040 (PML92_00040) | ssb | 9212..9724 (+) | 513 | WP_005875808.1 | single-stranded DNA-binding protein | Machinery gene |
| PML92_RS00045 (PML92_00045) | rpsR | 9750..9986 (+) | 237 | WP_005875810.1 | 30S ribosomal protein S18 | - |
| PML92_RS00050 (PML92_00050) | - | 10235..12208 (+) | 1974 | WP_016177140.1 | DHH family phosphoesterase | - |
| PML92_RS00055 (PML92_00055) | rplI | 12214..12666 (+) | 453 | WP_005875813.1 | 50S ribosomal protein L9 | - |
| PML92_RS00060 (PML92_00060) | dnaB | 13292..14659 (+) | 1368 | WP_005875816.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18598.09 Da Isoelectric Point: 4.6856
>NTDB_id=778531 PML92_RS00040 WP_005875808.1 9212..9724(+) (ssb) [Enterococcus durans strain R109-1]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSGGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRSASENRQQSGGSQSSGQSANNFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=778531 PML92_RS00040 WP_005875808.1 9212..9724(+) (ssb) [Enterococcus durans strain R109-1]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGGCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACGAAAGATCCAGATTTACGATATACATCAAGTGGCACTGCAGTTGC
AACGTTCACTTTAGCTGTCAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATCAACTGTGTGATTT
GGCGTAAATCAGCAGAAACATTAGCAAACTATGCTCGCAAAGGTACCCTTTTAGGTGTTACCGGACGTATCCAAACTCGT
TCTTATGATAATCAACAAGGACAACGTGTATATGTAACAGAAGTAGTTGCTGAAAATTTCCAATTATTGGAAAGTCGTTC
TGCATCTGAAAATCGTCAACAAAGCGGCGGTTCTCAAAGTTCTGGTCAATCGGCAAATAATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.819 |
100 |
0.612 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.983 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
62.353 |
0.376 |