Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QYR06_RS12350 Genome accession   NZ_CP129344
Coordinates   2608001..2610010 (-) Length   669 a.a.
NCBI ID   WP_010873536.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2603001..2615010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR06_RS12330 (QYR06_12305) - 2603165..2603368 (-) 204 WP_041428192.1 hypothetical protein -
  QYR06_RS12335 (QYR06_12310) - 2603390..2604652 (-) 1263 WP_010873533.1 glutamate-5-semialdehyde dehydrogenase -
  QYR06_RS12340 (QYR06_12315) - 2605107..2607353 (+) 2247 WP_010873534.1 sensor histidine kinase -
  QYR06_RS12345 (QYR06_12320) - 2607368..2607811 (+) 444 WP_010873535.1 response regulator -
  QYR06_RS12350 (QYR06_12325) uvrB 2608001..2610010 (-) 2010 WP_010873536.1 excinuclease ABC subunit UvrB Machinery gene
  QYR06_RS12355 (QYR06_12330) - 2610202..2610612 (+) 411 WP_010873537.1 hypothetical protein -
  QYR06_RS12360 (QYR06_12335) psbX 2610776..2610895 (-) 120 WP_010873538.1 photosystem II reaction center X protein -
  QYR06_RS12365 (QYR06_12340) purN 2611012..2611665 (+) 654 WP_010873539.1 phosphoribosylglycinamide formyltransferase -
  QYR06_RS12370 (QYR06_12345) - 2611662..2612384 (+) 723 WP_010873540.1 PD-(D/E)XK nuclease family protein -
  QYR06_RS12375 (QYR06_12350) - 2612395..2613894 (+) 1500 WP_010873541.1 AAA family ATPase -
  QYR06_RS12380 (QYR06_12355) - 2613919..2614677 (+) 759 WP_010873542.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 669 a.a.        Molecular weight: 76848.54 Da        Isoelectric Point: 4.9841

>NTDB_id=778461 QYR06_RS12350 WP_010873536.1 2608001..2610010(-) (uvrB) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ]
MTSDLFSLHAPFRPTGDQPTAIASLIESLQGEHKFQTLLGATGTGKTFTMASVIAELGRPTLVLAHNKTLAAQLCNELRQ
FFPENAVEYFISYYDYYQPEAYIPVTDTYIEKTASINDEIDMLRHSATRSLFERRDVIVVASISCIYGLGIPSQYLKAAV
PLQVGAEYDPRLVIRDLVNVQYSRNDVELQRGRFRLKGDVLEIVPAYEDRVIRIEFFGDEVEALRLIDPVSGEILQSLDR
ISIYPARHFVTPEETLEKACQQIQTEMEQQVAFLEKNNLLVEAQRLSQRTRYDLEMLREVGYCNGVENYSRYLADRQAGE
PPECLVDYFPEDWLLVIDESHVTIPQLRGMYNGDQARKKVLIDHGFRLPSAADNRPLKAEEFWQKVKQCVFVSATPGVWE
IEQSEARVIEQVIRPTGVLDPEIFVRPTTGQVDDLYGEIQTRVKLKERVLITTLTKRMAEDLTDYFSERGIKVQYLHSEI
QSIQRIEILQALRDGEFDVLIGVNLLREGLDLPEVSLVAIMDADKEGFLRAERSLIQTIGRAARHIRGQAILYADNFTDS
MQKAIAETERRRKIQQEYNEKHGITPQPINKRANNAILQFLDISRRLNSQQLEEVYEQAQDLPLEKIPDLIQQLEEKMQE
AAKKQEFEVAAIYRDRIQHLRDRLLGHKK

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=778461 QYR06_RS12350 WP_010873536.1 2608001..2610010(-) (uvrB) [Synechocystis sp. PCC 6803 substr. GT-T strain PCC 6803 isolate DELrpoZ]
ATGACTTCTGACCTCTTTTCCCTCCATGCGCCCTTTCGTCCTACCGGAGATCAACCCACGGCGATCGCCAGTTTGATCGA
GTCTTTGCAGGGAGAGCACAAGTTTCAAACCCTGCTGGGGGCAACGGGAACGGGGAAAACCTTCACCATGGCTTCGGTTA
TTGCGGAGTTGGGACGACCAACATTGGTATTAGCCCACAATAAAACCTTGGCGGCCCAATTATGTAATGAATTGCGGCAA
TTTTTTCCCGAAAACGCGGTTGAATACTTCATTAGTTATTACGACTATTACCAGCCAGAAGCCTATATTCCCGTCACCGA
TACCTATATCGAAAAAACGGCTTCTATCAACGATGAGATTGATATGTTGCGTCACTCCGCCACCCGTTCTCTGTTTGAAC
GACGGGATGTAATTGTGGTAGCTTCCATCAGTTGCATTTACGGTTTGGGTATTCCCAGCCAATATCTCAAAGCGGCCGTT
CCTCTGCAAGTGGGTGCCGAATATGATCCCCGCCTAGTAATTCGGGATTTGGTCAATGTGCAATATAGCCGCAACGATGT
GGAATTACAACGGGGACGATTTCGCCTCAAAGGAGATGTGTTGGAAATTGTGCCGGCCTATGAAGATCGGGTGATTCGCA
TCGAATTTTTTGGTGACGAAGTGGAAGCTCTACGGTTAATTGATCCGGTCAGCGGCGAAATTTTGCAAAGTTTAGACAGA
ATCAGCATTTATCCCGCCCGTCACTTTGTCACCCCAGAAGAAACCCTAGAAAAAGCCTGTCAGCAAATTCAAACGGAAAT
GGAACAACAGGTAGCTTTTTTAGAAAAAAATAATCTGTTGGTAGAAGCTCAAAGATTAAGTCAACGCACCCGTTATGACT
TGGAAATGCTCCGAGAAGTGGGCTATTGCAACGGAGTAGAAAATTATTCCCGCTATCTAGCCGATCGCCAGGCGGGGGAA
CCACCGGAATGTTTAGTGGATTATTTTCCCGAAGATTGGTTATTAGTAATTGATGAATCCCATGTGACTATTCCCCAATT
GCGGGGTATGTATAATGGCGACCAGGCCAGAAAAAAAGTTTTAATTGACCATGGCTTTCGTCTGCCCAGTGCGGCGGATA
ATCGCCCCCTAAAAGCAGAAGAATTTTGGCAAAAAGTTAAACAGTGTGTGTTTGTTTCTGCCACTCCGGGAGTTTGGGAA
ATAGAGCAATCGGAAGCAAGGGTAATTGAGCAGGTAATTCGCCCCACTGGAGTTCTTGATCCGGAAATTTTTGTCCGTCC
CACCACCGGCCAGGTGGATGATTTATACGGGGAAATTCAAACCAGGGTAAAGCTGAAAGAACGGGTATTAATCACAACTT
TAACTAAACGGATGGCGGAGGATTTAACCGATTATTTTTCTGAACGGGGCATCAAGGTTCAATATCTCCATTCCGAGATT
CAATCTATTCAACGTATTGAGATTTTACAAGCTTTACGAGACGGGGAATTTGATGTGTTAATTGGGGTAAATTTATTGCG
GGAAGGGTTAGATTTACCGGAAGTTTCCCTAGTAGCTATTATGGATGCAGATAAAGAAGGCTTTTTGCGGGCAGAGCGTT
CTTTAATTCAAACCATTGGCCGGGCCGCCCGTCATATTCGGGGACAGGCGATTTTATATGCTGATAATTTCACCGACAGT
ATGCAAAAGGCAATCGCCGAAACGGAAAGGAGGCGGAAAATCCAACAAGAATATAACGAAAAGCACGGTATTACCCCTCA
ACCGATTAATAAACGGGCTAACAATGCCATTTTGCAATTTCTTGATATTTCCCGTCGTTTAAACAGTCAACAGTTGGAGG
AAGTATATGAACAAGCCCAGGATTTACCCCTAGAAAAAATCCCCGATTTAATTCAACAATTGGAGGAAAAAATGCAAGAA
GCGGCCAAAAAACAGGAATTTGAAGTAGCTGCCATCTACCGAGACCGCATTCAACATTTGCGTGATCGGCTTTTGGGCCA
CAAAAAGTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(161-249)

UvrB/uvrC motif (UVR)

(630-662)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Type III restriction enzyme, res subunit (ResIII)

(16-93)

Ultra-violet resistance protein B (UvrB)

(552-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.079

98.057

0.57
  uvrB Streptococcus pneumoniae R6

57.927

98.057

0.568
  uvrB Streptococcus pneumoniae D39

57.927

98.057

0.568