Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PML73_RS00380 Genome accession   NZ_CP116571
Coordinates   76548..77075 (+) Length   175 a.a.
NCBI ID   WP_271865440.1    Uniprot ID   -
Organism   Enterococcus faecalis strain K190-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 71548..82075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML73_RS00340 (PML73_00340) - 72259..72444 (+) 186 WP_002411350.1 hypothetical protein -
  PML73_RS00345 (PML73_00345) - 72456..72629 (+) 174 WP_002381626.1 hypothetical protein -
  PML73_RS00350 (PML73_00350) - 72737..73039 (+) 303 WP_083578494.1 hypothetical protein -
  PML73_RS00355 (PML73_00355) - 73125..73868 (+) 744 WP_002401996.1 ERF family protein -
  PML73_RS00360 (PML73_00360) - 73868..74806 (+) 939 WP_160816517.1 DUF1351 domain-containing protein -
  PML73_RS00365 (PML73_00365) - 74803..75444 (+) 642 WP_160816516.1 putative HNHc nuclease -
  PML73_RS00370 (PML73_00370) - 75448..76245 (+) 798 WP_010784194.1 helix-turn-helix domain-containing protein -
  PML73_RS00375 (PML73_00375) - 76250..76558 (+) 309 WP_010822654.1 MazG-like family protein -
  PML73_RS00380 (PML73_00380) ssb 76548..77075 (+) 528 WP_271865440.1 single-stranded DNA-binding protein Machinery gene
  PML73_RS00385 (PML73_00385) - 77087..77416 (+) 330 WP_010821535.1 hypothetical protein -
  PML73_RS00390 (PML73_00390) - 77436..77642 (+) 207 WP_002395701.1 hypothetical protein -
  PML73_RS00395 (PML73_00395) - 77695..78435 (+) 741 WP_002406059.1 hypothetical protein -
  PML73_RS00400 (PML73_00400) - 78492..79145 (+) 654 WP_002406058.1 N-6 DNA methylase -
  PML73_RS00405 (PML73_00405) - 79142..80086 (+) 945 WP_002406057.1 site-specific integrase -
  PML73_RS00410 (PML73_00410) - 80099..80671 (+) 573 WP_002406056.1 hypothetical protein -
  PML73_RS00415 (PML73_00415) - 80655..81035 (+) 381 WP_271865511.1 YopX family protein -
  PML73_RS00420 (PML73_00420) - 81036..81368 (+) 333 WP_233060211.1 hypothetical protein -
  PML73_RS00425 (PML73_00425) - 81368..81529 (+) 162 WP_271865446.1 hypothetical protein -
  PML73_RS00430 (PML73_00430) - 81526..81804 (+) 279 WP_271865448.1 hypothetical protein -
  PML73_RS00435 (PML73_00435) - 81816..82034 (+) 219 WP_010774592.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19285.11 Da        Isoelectric Point: 4.7078

>NTDB_id=778459 PML73_RS00380 WP_271865440.1 76548..77075(+) (ssb) [Enterococcus faecalis strain K190-1]
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEAKSANENRNSIQTSQNSGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=778459 PML73_RS00380 WP_271865440.1 76548..77075(+) (ssb) [Enterococcus faecalis strain K190-1]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGGCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGACTTCACAGAACAGCGGTACAAGTGTTCAAAACAATTTCGAGAGTAATTATG
CCACAAATCAAAATAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGACGATGATCTGCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.091

100

0.594
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36