Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PML73_RS00380 | Genome accession | NZ_CP116571 |
| Coordinates | 76548..77075 (+) | Length | 175 a.a. |
| NCBI ID | WP_271865440.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain K190-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 65628..111663 | 76548..77075 | within | 0 |
Gene organization within MGE regions
Location: 65628..111663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PML73_RS00295 (PML73_00295) | - | 67551..68900 (-) | 1350 | WP_002411357.1 | recombinase family protein | - |
| PML73_RS00300 (PML73_00300) | - | 68929..69111 (-) | 183 | WP_002411356.1 | hypothetical protein | - |
| PML73_RS00305 (PML73_00305) | - | 69276..69992 (-) | 717 | WP_229017980.1 | XRE family transcriptional regulator | - |
| PML73_RS00310 (PML73_00310) | - | 70138..70344 (+) | 207 | WP_002411354.1 | helix-turn-helix domain-containing protein | - |
| PML73_RS00315 (PML73_00315) | - | 70382..70543 (+) | 162 | WP_002411353.1 | hypothetical protein | - |
| PML73_RS00320 (PML73_00320) | - | 70601..70771 (+) | 171 | WP_002357333.1 | hypothetical protein | - |
| PML73_RS00325 (PML73_00325) | - | 70765..70986 (-) | 222 | WP_229018025.1 | hypothetical protein | - |
| PML73_RS00330 (PML73_00330) | - | 71054..71269 (+) | 216 | WP_002357335.1 | hypothetical protein | - |
| PML73_RS00335 (PML73_00335) | - | 71538..72248 (+) | 711 | WP_010821530.1 | Rha family transcriptional regulator | - |
| PML73_RS00340 (PML73_00340) | - | 72259..72444 (+) | 186 | WP_002411350.1 | hypothetical protein | - |
| PML73_RS00345 (PML73_00345) | - | 72456..72629 (+) | 174 | WP_002381626.1 | hypothetical protein | - |
| PML73_RS00350 (PML73_00350) | - | 72737..73039 (+) | 303 | WP_083578494.1 | hypothetical protein | - |
| PML73_RS00355 (PML73_00355) | - | 73125..73868 (+) | 744 | WP_002401996.1 | ERF family protein | - |
| PML73_RS00360 (PML73_00360) | - | 73868..74806 (+) | 939 | WP_160816517.1 | DUF1351 domain-containing protein | - |
| PML73_RS00365 (PML73_00365) | - | 74803..75444 (+) | 642 | WP_160816516.1 | putative HNHc nuclease | - |
| PML73_RS00370 (PML73_00370) | - | 75448..76245 (+) | 798 | WP_010784194.1 | helix-turn-helix domain-containing protein | - |
| PML73_RS00375 (PML73_00375) | - | 76250..76558 (+) | 309 | WP_010822654.1 | MazG-like family protein | - |
| PML73_RS00380 (PML73_00380) | ssb | 76548..77075 (+) | 528 | WP_271865440.1 | single-stranded DNA-binding protein | Machinery gene |
| PML73_RS00385 (PML73_00385) | - | 77087..77416 (+) | 330 | WP_010821535.1 | hypothetical protein | - |
| PML73_RS00390 (PML73_00390) | - | 77436..77642 (+) | 207 | WP_002395701.1 | hypothetical protein | - |
| PML73_RS00395 (PML73_00395) | - | 77695..78435 (+) | 741 | WP_002406059.1 | hypothetical protein | - |
| PML73_RS00400 (PML73_00400) | - | 78492..79145 (+) | 654 | WP_002406058.1 | N-6 DNA methylase | - |
| PML73_RS00405 (PML73_00405) | - | 79142..80086 (+) | 945 | WP_002406057.1 | site-specific integrase | - |
| PML73_RS00410 (PML73_00410) | - | 80099..80671 (+) | 573 | WP_002406056.1 | hypothetical protein | - |
| PML73_RS00415 (PML73_00415) | - | 80655..81035 (+) | 381 | WP_271865511.1 | YopX family protein | - |
| PML73_RS00420 (PML73_00420) | - | 81036..81368 (+) | 333 | WP_233060211.1 | hypothetical protein | - |
| PML73_RS00425 (PML73_00425) | - | 81368..81529 (+) | 162 | WP_271865446.1 | hypothetical protein | - |
| PML73_RS00430 (PML73_00430) | - | 81526..81804 (+) | 279 | WP_271865448.1 | hypothetical protein | - |
| PML73_RS00435 (PML73_00435) | - | 81816..82034 (+) | 219 | WP_010774592.1 | hypothetical protein | - |
| PML73_RS00440 (PML73_00440) | - | 82031..82588 (+) | 558 | WP_002416044.1 | DUF1642 domain-containing protein | - |
| PML73_RS00445 (PML73_00445) | - | 82771..82980 (+) | 210 | WP_002402424.1 | hypothetical protein | - |
| PML73_RS00450 (PML73_00450) | - | 82981..83388 (+) | 408 | WP_002416043.1 | transcriptional regulator | - |
| PML73_RS00455 (PML73_00455) | - | 83632..83901 (+) | 270 | WP_104807408.1 | hypothetical protein | - |
| PML73_RS00460 (PML73_00460) | - | 83937..84074 (-) | 138 | WP_010773976.1 | zinc ribbon-containing protein | - |
| PML73_RS00470 (PML73_00470) | - | 84602..85435 (+) | 834 | WP_271865513.1 | terminase small subunit | - |
| PML73_RS00475 (PML73_00475) | - | 85425..86714 (+) | 1290 | WP_185116382.1 | PBSX family phage terminase large subunit | - |
| PML73_RS00480 (PML73_00480) | - | 86730..88229 (+) | 1500 | WP_148251867.1 | phage portal protein | - |
| PML73_RS00485 (PML73_00485) | - | 88229..89386 (+) | 1158 | WP_002411227.1 | phage minor capsid protein | - |
| PML73_RS00490 (PML73_00490) | - | 89470..89733 (+) | 264 | WP_025188247.1 | DUF6275 family protein | - |
| PML73_RS00495 (PML73_00495) | - | 89839..90393 (+) | 555 | WP_010784200.1 | phage scaffolding protein | - |
| PML73_RS00500 (PML73_00500) | - | 90410..91276 (+) | 867 | WP_002357374.1 | hypothetical protein | - |
| PML73_RS00505 (PML73_00505) | - | 91374..91778 (+) | 405 | WP_010784201.1 | hypothetical protein | - |
| PML73_RS00510 (PML73_00510) | - | 91772..92113 (+) | 342 | WP_002411222.1 | putative minor capsid protein | - |
| PML73_RS00515 (PML73_00515) | - | 92113..92439 (+) | 327 | WP_002411221.1 | minor capsid protein | - |
| PML73_RS00520 (PML73_00520) | - | 92439..92837 (+) | 399 | WP_002411220.1 | minor capsid protein | - |
| PML73_RS00525 (PML73_00525) | - | 92837..93316 (+) | 480 | WP_002411219.1 | phage tail tube protein | - |
| PML73_RS00530 (PML73_00530) | - | 93387..93839 (+) | 453 | WP_010784203.1 | hypothetical protein | - |
| PML73_RS00535 (PML73_00535) | - | 93892..94311 (+) | 420 | WP_002411217.1 | DUF6673 family protein | - |
| PML73_RS00540 (PML73_00540) | - | 94317..94889 (+) | 573 | WP_010784204.1 | Gp15 family bacteriophage protein | - |
| PML73_RS00545 (PML73_00545) | - | 94882..98202 (+) | 3321 | WP_104855461.1 | hypothetical protein | - |
| PML73_RS00550 (PML73_00550) | - | 98202..98963 (+) | 762 | WP_010826290.1 | distal tail protein Dit | - |
| PML73_RS00555 (PML73_00555) | - | 98960..101227 (+) | 2268 | WP_271865451.1 | phage tail spike protein | - |
| PML73_RS00560 (PML73_00560) | - | 101227..103014 (+) | 1788 | WP_271865453.1 | BppU family phage baseplate upper protein | - |
| PML73_RS00565 (PML73_00565) | - | 103088..103309 (+) | 222 | WP_334312076.1 | hypothetical protein | - |
| PML73_RS00570 (PML73_00570) | - | 103302..103538 (+) | 237 | WP_002411209.1 | phage holin | - |
| PML73_RS00575 (PML73_00575) | - | 103535..104620 (+) | 1086 | WP_010731631.1 | SH3 domain-containing protein | - |
| PML73_RS00580 (PML73_00580) | - | 105014..105547 (+) | 534 | WP_002402066.1 | PBECR4 domain-containing protein | - |
| PML73_RS00590 (PML73_00590) | - | 105702..109577 (+) | 3876 | Protein_115 | 5'-nucleotidase C-terminal domain-containing protein | - |
| PML73_RS00595 (PML73_00595) | - | 109713..111392 (+) | 1680 | WP_002361487.1 | peptide ABC transporter substrate-binding protein | - |
| PML73_RS00600 (PML73_00600) | - | 111439..111663 (-) | 225 | WP_002356070.1 | DUF896 domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19285.11 Da Isoelectric Point: 4.7078
>NTDB_id=778459 PML73_RS00380 WP_271865440.1 76548..77075(+) (ssb) [Enterococcus faecalis strain K190-1]
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEAKSANENRNSIQTSQNSGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINNVVLVGRLTKDPDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLEAKSANENRNSIQTSQNSGTSVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=778459 PML73_RS00380 WP_271865440.1 76548..77075(+) (ssb) [Enterococcus faecalis strain K190-1]
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGGCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGACTTCACAGAACAGCGGTACAAGTGTTCAAAACAATTTCGAGAGTAATTATG
CCACAAATCAAAATAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGACGATGATCTGCCGTTCTAG
ATGATAAATAATGTGGTATTAGTCGGAAGATTGACAAAAGATCCTGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAATTATTAGAGGCAAAAAG
CGCCAATGAGAATAGAAATAGCATTCAGACTTCACAGAACAGCGGTACAAGTGTTCAAAACAATTTCGAGAGTAATTATG
CCACAAATCAAAATAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGCGCAGGTAATTCAATCGACATTAGCGACGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.091 |
100 |
0.594 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.143 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |