Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PJU76_RS11890 Genome accession   NZ_CP116458
Coordinates   2367169..2368527 (-) Length   452 a.a.
NCBI ID   WP_271779693.1    Uniprot ID   -
Organism   Acidithiobacillus ferriphilus strain YL25     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2362169..2373527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJU76_RS11860 (PJU76_11860) - 2362621..2363385 (-) 765 WP_271779688.1 hypothetical protein -
  PJU76_RS11865 (PJU76_11865) - 2363445..2363765 (-) 321 WP_271779689.1 hypothetical protein -
  PJU76_RS11870 (PJU76_11870) - 2363856..2364866 (-) 1011 WP_271779690.1 class 1 fructose-bisphosphatase -
  PJU76_RS11875 (PJU76_11875) - 2364900..2365652 (-) 753 WP_271779691.1 cell division protein ZapD -
  PJU76_RS11880 (PJU76_11880) coaE 2365769..2366371 (-) 603 WP_215861727.1 dephospho-CoA kinase -
  PJU76_RS11885 (PJU76_11885) - 2366372..2367172 (-) 801 WP_271779692.1 A24 family peptidase -
  PJU76_RS11890 (PJU76_11890) pilR 2367169..2368527 (-) 1359 WP_271779693.1 sigma-54 dependent transcriptional regulator Regulator
  PJU76_RS11895 (PJU76_11895) - 2368524..2370122 (-) 1599 WP_271779694.1 nitrogen regulation protein NR(II) -
  PJU76_RS11900 (PJU76_11900) pilB 2370248..2371957 (-) 1710 WP_215849997.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PJU76_RS11905 (PJU76_11905) aroE 2371927..2372826 (-) 900 WP_271779695.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48615.89 Da        Isoelectric Point: 5.4964

>NTDB_id=777478 PJU76_RS11890 WP_271779693.1 2367169..2368527(-) (pilR) [Acidithiobacillus ferriphilus strain YL25]
MMADFSVLPPALIVDDEPNIVELLGITLQGMGIAVTGAYSLAEAFARLAEGAPSLCLSDLRLPDGSGIDLVRRLHALHPR
VPVAVITAYSSADGAVEAMQAGAFDYMAKPIELTRLRRLISQAVDLARLSPMGPDGTQRLVGDSLVMRRLRDDIRRVARS
NAPVHITGESGTGKELAARAIHASGVRHDKPFVAVNCGAIPEGLVESELFGAEKGAYSGAVQRREGLFVAANGGTIFLDE
VGELPMMVQVKLLRAIQERSIRPLGASREIPLDLRFISATHRDLQEMVVAGSFRRDLLYRLDVVRLHMPPLREHPEDIPQ
LAEVILQRIGDAQPGVPTRLSAGTLARLGGYAFPGNVRELENLLERRIALQRDDILPEEELTSSDRVAPENSMLAAVSAS
AAAAGLDTAEAALLRQMLGQAGGDRHHAADLLGVSVQSLELRLSRLSLEEIA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=777478 PJU76_RS11890 WP_271779693.1 2367169..2368527(-) (pilR) [Acidithiobacillus ferriphilus strain YL25]
ATGATGGCCGATTTTTCCGTATTGCCACCTGCCCTGATCGTGGATGATGAGCCGAATATCGTTGAATTGCTGGGCATTAC
GTTGCAAGGTATGGGAATCGCTGTCACCGGTGCCTATTCCCTCGCAGAGGCCTTCGCCCGCCTCGCCGAAGGTGCCCCCT
CTTTATGCTTGAGCGATCTGCGTTTACCGGATGGTTCGGGTATTGATCTGGTACGTCGTCTACACGCGTTGCATCCGCGA
GTGCCGGTCGCCGTGATTACGGCCTACTCCTCCGCCGATGGCGCCGTCGAGGCGATGCAGGCAGGGGCCTTTGATTACAT
GGCTAAGCCCATCGAACTTACGCGTCTGCGGCGACTGATATCGCAAGCCGTTGATCTCGCTCGCCTGTCACCGATGGGTC
CGGACGGTACGCAAAGGTTGGTGGGTGATTCTCTGGTCATGCGGCGCTTGCGCGACGATATCCGCCGTGTCGCGCGAAGT
AACGCGCCGGTACATATTACCGGTGAGTCTGGTACGGGTAAGGAGTTGGCAGCGCGTGCGATACACGCCTCAGGGGTCCG
TCACGACAAGCCTTTCGTGGCCGTCAACTGCGGCGCCATTCCCGAGGGACTGGTAGAAAGCGAGCTCTTTGGTGCCGAAA
AGGGGGCTTACTCCGGTGCTGTACAGCGCCGCGAGGGGCTCTTTGTGGCGGCCAATGGCGGTACCATTTTCCTGGATGAG
GTCGGTGAGCTACCGATGATGGTGCAGGTTAAGCTCCTGCGCGCCATTCAGGAGCGCAGCATTCGTCCATTGGGTGCATC
GCGGGAAATTCCCCTGGATCTGCGTTTCATTTCCGCAACCCACCGTGATTTGCAAGAGATGGTTGTTGCCGGTAGCTTTC
GTCGGGATCTCCTGTATCGATTGGATGTCGTGCGACTCCATATGCCTCCCTTGCGTGAGCATCCGGAGGACATTCCTCAG
TTGGCAGAGGTGATTCTGCAGCGTATCGGGGACGCGCAGCCTGGTGTGCCGACGCGGCTGTCTGCGGGGACTCTTGCGCG
ACTGGGTGGTTACGCCTTCCCCGGCAATGTCCGCGAACTGGAAAATTTGCTGGAGCGTCGTATCGCGTTACAGCGGGACG
ATATTCTACCTGAAGAAGAACTTACGTCCTCTGACCGCGTGGCGCCAGAAAACAGCATGCTTGCCGCTGTATCGGCAAGC
GCTGCCGCGGCTGGTTTAGACACGGCCGAGGCAGCATTACTGCGCCAGATGCTGGGGCAGGCCGGGGGAGACCGGCATCA
TGCCGCAGATCTGCTGGGTGTCAGTGTGCAATCTCTGGAACTGAGACTCAGCAGATTGTCTCTGGAAGAAATCGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-120)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.775

98.23

0.489
  pilR Acinetobacter baumannii strain A118

40.347

100

0.412