Detailed information NTG0077737

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PPTS312_RS09675
• Genome accession: NZ_AP022324
• Coordinates: 2129328..2131541 (+)
• Length: 737 a.a.
• NCBI ID: WP_027609507.1
• Uniprot ID: A0A7U6RBG0
• Organism: Pseudomonas putida strain TS312
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2124328..2136541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PPTS312_RS09655 (PPTS312_19180)	-	2126204..2126827 (+)	624	WP_019098551.1	glutathione S-transferase	-
PPTS312_RS09660 (PPTS312_19190)	-	2126961..2127893 (+)	933	WP_016715124.1	ABC transporter ATP-binding protein	-
PPTS312_RS09665 (PPTS312_19200)	-	2127890..2128669 (+)	780	WP_019098550.1	ABC transporter permease	-
PPTS312_RS09670 (PPTS312_19210)	-	2128679..2129185 (-)	507	Protein_1909	DUF2062 domain-containing protein	-
PPTS312_RS09675 (PPTS312_19220)	comA	2129328..2131541 (+)	2214	WP_027609507.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PPTS312_RS09680 (PPTS312_19230)	exbB	2131671..2132306 (+)	636	WP_016391244.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PPTS312_RS09685 (PPTS312_19240)	-	2132303..2132737 (+)	435	WP_012271149.1	ExbD/TolR family protein	-
PPTS312_RS09690 (PPTS312_19250)	lpxK	2132737..2133738 (+)	1002	WP_019098600.1	tetraacyldisaccharide 4'-kinase	-
PPTS312_RS09695 (PPTS312_19260)	-	2133783..2133968 (+)	186	WP_003247142.1	Trm112 family protein	-
PPTS312_RS09700 (PPTS312_19270)	kdsB	2133965..2134729 (+)	765	WP_019098599.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PPTS312_RS09705 (PPTS312_19280)	-	2134729..2135193 (+)	465	WP_161989759.1	low molecular weight protein-tyrosine-phosphatase	-
PPTS312_RS09710 (PPTS312_19290)	murB	2135190..2136209 (+)	1020	WP_027615865.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 79169.27 Da
• Isoelectric Point: 10.6918

>NTDB_id=77737 PPTS312_RS09675 WP_027609507.1 2129328..2131541(+) (comA) [Pseudomonas putida strain TS312]
MRTGMFALALGLLCLGFLPVLPSVGWLIALAACAVASLFTRVWPLGCFLLGLCWACGSAQLALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELDAARSRRAELPQRLQLSWFGGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGRTAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPVRLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALLPLLLALVVVLLVEPL
AALLPGFWLSFSAVATLLYCFSARLGGWRPWRAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTVLLPLPGVGEALLWLAGGLLDLLFRGLALVAQQRPAWMPPALPVWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPAKGDSDLGERVVLPTLRKLGVAALDVMLVSHAHADHAGGAA
AIQRGLPVRRIIGGEALGDVPLQPCVSGERWDWDGVRFSLWRWADAQSSNDRSCVLMVEAQGERLLLAGDMEAGAERAWL
AATEAPGIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHVQVLERYRRYGVAIHDTAVEGALRLVVGRQG
EVEGVRGQRRFWRAQLD

Nucleotide

• Length: 2214 bp

>NTDB_id=77737 PPTS312_RS09675 WP_027609507.1 2129328..2131541(+) (comA) [Pseudomonas putida strain TS312]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGTACTGCCATCGGTCGGATGGTT
GATCGCGCTGGCTGCCTGCGCTGTCGCCAGCCTGTTCACCCGCGTGTGGCCGTTGGGTTGTTTTCTGCTGGGTTTGTGTT
GGGCTTGCGGGTCTGCTCAGCTGGCCCTTGATGATCGCCTGGCTGCCGGCCTGGATGGCCGCACCTTGTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGCCCGAACGGCACAAGGCGTGCGCTTCGAGCTGGACGCTGCACGCTCGCGGCGGGCCGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGGTGGGCCGCCTCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGTTGAACCCGCATGGGCCGGACCGCGAGGCGCAACTGCTGGCGCGGCGGGTGGGTGCCACGGGC
ACGGTCAAGGCAGGGCAGCTGCTGGCGCCAGTAACCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTCGCAGTCGA
GGCCAATGGCCGAACGGCGGCGTTGGTGGCGCTGGTGCTGGGCGATGGGGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACTGGCACGGTGCACCTGCTGGTGATTTCTGGCCAGCACATCGGCCTGGTGGCCGGTTTGCTGTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTGTGGCCTGTACGGCTGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCCATGGCCGC
TGCGCTGGCGTACGGTTGGCTGGCCGGTGCGGGCGTGCCAGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGTCTGCGTTTTCGCCACCTCGGTGCACTGTTGCCGCTGTTGCTGGCGCTGGTCGTGGTGTTGCTGGTCGAACCGCTG
GCGGCATTGTTGCCGGGGTTCTGGCTGTCGTTTTCCGCAGTCGCCACGCTTCTCTATTGCTTCAGTGCCCGGCTAGGGGG
CTGGCGGCCCTGGCGAGCCTGGACGCGGGCGCAATGGGTAATCGCCATCGGTTTGCTGCCAGTGTTGTTGGCCACTGGCC
TGCCGGTGAGCTTGAGTGCGCCGTTGGCCAATCTGGTAGCGGTGCCGTGGATCAGCCTGGCGGTGTTGCCGTTGGCGCTG
CTGGGCACGGTACTGCTGCCATTGCCCGGGGTAGGGGAGGCGTTGTTATGGCTGGCGGGCGGGCTGCTGGACCTGTTGTT
CCGGGGGTTGGCGTTGGTGGCGCAACAGCGCCCGGCCTGGATGCCGCCAGCATTGCCAGTGTGGGCCTGGTTGCTGGTTT
GCCTGGGGGCGCTGTTGCTGCTGCTGCCTCGGGGCGTGCCGTTGCGTGGGTTGGGGGGCGTGATGCTGTTGGCCCTGTGG
GTGCCGAGGGAGCCGGTGCCGCTTGGGCAGGTCGAAGTCTGGCAACTGGACGTCGGCCAAGGGCTGGCAGTGCTGTTGCG
CACCCGCCATCACAACCTGCTTTACGATGCCGGGCCGGCCAAGGGTGACAGTGACCTGGGCGAACGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGCGTGGCGGCCCTTGACGTGATGCTGGTCAGCCACGCCCATGCTGATCATGCGGGCGGTGCTGCC
GCTATCCAGCGAGGTCTGCCGGTGCGGCGGATTATCGGTGGGGAAGCGCTGGGCGATGTTCCGTTGCAACCTTGTGTCAG
CGGCGAGCGATGGGACTGGGATGGCGTGCGGTTTTCGCTATGGCGTTGGGCCGACGCACAGAGCAGCAATGACCGCTCTT
GTGTGCTGATGGTCGAGGCACAGGGCGAGCGATTGCTGCTGGCGGGGGATATGGAGGCTGGGGCCGAACGGGCCTGGCTG
GCGGCCACAGAGGCGCCGGGAATCGACTGGTTGCAGTCGCCGCACCATGGCAGCCGCAGCTCGTCCAGCGAGGCTTTCAT
CCGTGCCACGGCGCCGCGCGGGGTGCTGATTTCGCGTGGGCGCAACAACAGCTTTGGGCACCCGCATGTGCAGGTGCTCG
AGCGCTATCGGCGGTATGGGGTGGCGATACATGATACGGCGGTGGAGGGAGCGTTGCGGTTGGTGGTGGGGCGGCAGGGG
GAGGTTGAAGGTGTTCGGGGGCAGCGGCGGTTTTGGCGGGCTCAACTGGACTAG

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (497-674)

3D structure

• AlphaFold DB: A0A7U6RBG0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60	97.693	0.586
comA	Ralstonia pseudosolanacearum GMI1000	37.032	100	0.389