Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PPTS312_RS09680 Genome accession   NZ_AP022324
Coordinates   2131671..2132306 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas putida strain TS312     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126671..2137306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPTS312_RS09660 (PPTS312_19190) - 2126961..2127893 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  PPTS312_RS09665 (PPTS312_19200) - 2127890..2128669 (+) 780 WP_019098550.1 ABC transporter permease -
  PPTS312_RS09670 (PPTS312_19210) - 2128679..2129185 (-) 507 Protein_1909 DUF2062 domain-containing protein -
  PPTS312_RS09675 (PPTS312_19220) comA 2129328..2131541 (+) 2214 WP_027609507.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PPTS312_RS09680 (PPTS312_19230) exbB 2131671..2132306 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PPTS312_RS09685 (PPTS312_19240) - 2132303..2132737 (+) 435 WP_012271149.1 ExbD/TolR family protein -
  PPTS312_RS09690 (PPTS312_19250) lpxK 2132737..2133738 (+) 1002 WP_019098600.1 tetraacyldisaccharide 4'-kinase -
  PPTS312_RS09695 (PPTS312_19260) - 2133783..2133968 (+) 186 WP_003247142.1 Trm112 family protein -
  PPTS312_RS09700 (PPTS312_19270) kdsB 2133965..2134729 (+) 765 WP_019098599.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PPTS312_RS09705 (PPTS312_19280) - 2134729..2135193 (+) 465 WP_161989759.1 low molecular weight protein-tyrosine-phosphatase -
  PPTS312_RS09710 (PPTS312_19290) murB 2135190..2136209 (+) 1020 WP_027615865.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=77738 PPTS312_RS09680 WP_016391244.1 2131671..2132306(+) (exbB) [Pseudomonas putida strain TS312]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=77738 PPTS312_RS09680 WP_016391244.1 2131671..2132306(+) (exbB) [Pseudomonas putida strain TS312]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGTACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment