Detailed information NTG0777132

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PL263_RS11170
• Genome accession: NZ_CP116398
• Coordinates: 2497330..2498670 (-)
• Length: 446 a.a.
• NCBI ID: WP_278209478.1
• Uniprot ID: -
• Organism: Methylomonas sp. EFPC3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2492330..2503670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PL263_RS11155 (PL263_11150)	-	2493789..2494640 (-)	852	WP_140910799.1	HDOD domain-containing protein	-
PL263_RS11160 (PL263_11155)	-	2494822..2496657 (+)	1836	WP_278209476.1	EAL domain-containing protein	-
PL263_RS11165 (PL263_11160)	-	2496807..2497283 (+)	477	WP_278209477.1	hypothetical protein	-
PL263_RS11170 (PL263_11165)	pilR	2497330..2498670 (-)	1341	WP_278209478.1	sigma-54 dependent transcriptional regulator	Regulator
PL263_RS11175 (PL263_11170)	-	2498667..2500208 (-)	1542	WP_278209479.1	ATP-binding protein	-
PL263_RS11180 (PL263_11175)	sucC	2500388..2501557 (+)	1170	WP_278209480.1	ADP-forming succinate--CoA ligase subunit beta	-
PL263_RS11185 (PL263_11180)	sucD	2501557..2502429 (+)	873	WP_278209481.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49667.37 Da
• Isoelectric Point: 6.5101

>NTDB_id=777132 PL263_RS11170 WP_278209478.1 2497330..2498670(-) (pilR) [Methylomonas sp. EFPC3]
MNMPITLLVDDEPDIRELLEITLNRMQIQTCCAATLAEAKHWLASRSFDLCLTDMRLPDGDGLELVDYIQSQGLQLPVAV
ITAHGSMDVAIKAMKKGAFDFLSKPVDLAVLRQLVSHALQISLNRVAEKERRTRDLLLGESMPMRNIRSKIDKVARNQAP
VYISGESGSGKELVARLIHQQSPRSDKAFVAINCGAIPHELMESEFFGHKKGSFTGAVSDKQGLFQAAEGGTLFLDEVAD
LPLALQVKLLRAIQEKKIRPIGEQHEIPVDVRLLSATHRDLAKMVQEGSFRQDLYYRINVIELNLPPLRARAADIPQLTA
HLLQGLARNNGIAKPELSDAALSALKQYYFPGNVRELENILERALALHEGGVIQVDDLNLPMGLDLAVAEDFNAEKMSLE
SYLEDIEKKALSSALEENRWNKTATAKYLGMSFRSLRYRLKKLGLE

Nucleotide

• Length: 1341 bp

>NTDB_id=777132 PL263_RS11170 WP_278209478.1 2497330..2498670(-) (pilR) [Methylomonas sp. EFPC3]
ATGAATATGCCTATTACTTTGTTGGTTGACGACGAACCCGATATTCGGGAGTTATTGGAGATCACGCTAAACCGGATGCA
AATCCAAACCTGCTGCGCGGCGACGCTAGCCGAAGCCAAGCATTGGTTAGCCAGCCGATCTTTCGATTTATGTCTTACCG
ACATGCGCTTGCCGGATGGTGACGGTCTGGAGCTGGTCGATTACATTCAGAGCCAAGGCTTGCAATTGCCGGTGGCGGTG
ATTACGGCCCACGGCAGCATGGATGTTGCGATCAAAGCCATGAAAAAAGGCGCTTTCGATTTTCTGTCCAAACCGGTCGA
TCTGGCGGTATTGCGGCAGTTGGTCAGTCATGCCTTGCAAATCTCGCTGAACCGGGTGGCGGAAAAAGAACGCCGCACCC
GCGATTTGTTGCTGGGCGAGTCGATGCCAATGCGCAATATCCGCTCGAAGATCGATAAGGTGGCGCGGAATCAGGCGCCG
GTATATATCAGCGGCGAGTCCGGTTCCGGCAAGGAGTTGGTGGCACGACTGATCCATCAACAAAGTCCCCGTAGCGATAA
GGCATTCGTCGCCATCAACTGCGGAGCGATCCCGCATGAATTGATGGAAAGCGAGTTCTTCGGCCATAAAAAAGGCAGTT
TCACCGGGGCGGTCAGCGACAAGCAAGGCTTGTTCCAAGCTGCGGAAGGCGGCACCCTGTTTCTGGACGAAGTGGCCGAC
TTGCCGTTGGCATTGCAAGTCAAATTACTGAGAGCGATACAAGAAAAGAAAATCCGGCCGATTGGCGAACAACACGAGAT
TCCGGTGGATGTGCGTCTGTTGAGTGCCACCCACCGGGATTTAGCCAAAATGGTTCAGGAAGGCAGTTTTCGGCAGGACT
TGTATTACCGGATCAACGTCATCGAACTGAATTTGCCGCCGTTACGGGCACGGGCGGCCGATATTCCGCAATTGACCGCA
CATTTGTTGCAAGGGTTGGCCCGTAACAACGGCATTGCCAAGCCGGAATTATCCGATGCGGCGCTCAGCGCGTTGAAGCA
ATATTATTTTCCCGGCAACGTTCGCGAATTGGAAAATATTCTGGAGCGAGCTTTGGCGTTACATGAGGGCGGGGTGATTC
AGGTAGACGATCTGAATTTGCCGATGGGCTTGGATTTGGCTGTGGCCGAAGATTTCAATGCCGAAAAAATGTCGCTGGAA
AGCTATTTGGAAGATATCGAGAAAAAGGCATTGAGCTCGGCCCTGGAAGAAAACCGCTGGAACAAAACGGCGACAGCCAA
ATATTTGGGGATGAGTTTCCGCTCATTGCGTTACCGCTTGAAGAAACTCGGCCTGGAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.889	100	0.635
pilR	Acinetobacter baumannii strain A118	50.215	100	0.525
luxO	Vibrio cholerae strain A1552	38.652	99.776	0.386