Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PFZ59_RS05575 Genome accession   NZ_CP116393
Coordinates   1082475..1082969 (+) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1081433..1084575 1082475..1082969 within 0


Gene organization within MGE regions


Location: 1081433..1084575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS05565 (PFZ59_05565) tnpA 1081433..1081897 (+) 465 WP_277697689.1 IS200/IS605-like element ISSsu4 family transposase -
  PFZ59_RS05570 (PFZ59_05570) rpsF 1082173..1082463 (+) 291 WP_002942403.1 30S ribosomal protein S6 -
  PFZ59_RS05575 (PFZ59_05575) ssbA 1082475..1082969 (+) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  PFZ59_RS05580 (PFZ59_05580) rpsR 1083002..1083241 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  PFZ59_RS05585 (PFZ59_05585) - 1083283..1084539 (-) 1257 WP_277697785.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=777095 PFZ59_RS05575 WP_002942409.1 1082475..1082969(+) (ssbA) [Streptococcus suis strain SS/UPM/MY/F001]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=777095 PFZ59_RS05575 WP_002942409.1 1082475..1082969(+) (ssbA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCACCTTATCAAG
CACCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGCAATCCAATGGACATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366