Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QWI19_RS15200 Genome accession   NZ_CP129123
Coordinates   2916265..2916975 (-) Length   236 a.a.
NCBI ID   WP_015251433.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2911265..2921975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS15180 cysK 2911316..2912251 (+) 936 WP_003229237.1 cysteine synthase A -
  QWI19_RS15185 pepV 2912285..2913676 (-) 1392 WP_015251436.1 dipeptidase PepV -
  QWI19_RS15190 pbuO 2913773..2915071 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  QWI19_RS15195 ythQ 2915111..2916268 (-) 1158 WP_048655280.1 ABC transporter permease -
  QWI19_RS15200 pptA 2916265..2916975 (-) 711 WP_015251433.1 ABC transporter ATP-binding protein Regulator
  QWI19_RS15205 ytzE 2917265..2917486 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QWI19_RS15210 rsuA 2917608..2918327 (-) 720 WP_048655246.1 pseudouridine synthase -
  QWI19_RS15215 murJ 2918396..2920030 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  QWI19_RS15220 ytfP 2920233..2921495 (+) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26521.57 Da        Isoelectric Point: 5.0109

>NTDB_id=777056 QWI19_RS15200 WP_015251433.1 2916265..2916975(-) (pptA) [Bacillus subtilis strain 6D1]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEYPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDQVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=777056 QWI19_RS15200 WP_015251433.1 2916265..2916975(-) (pptA) [Bacillus subtilis strain 6D1]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGTATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCAGGTTAAACATGAGCTGCCTGTCACCTTTTCAAAAGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACCAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGCGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432