Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PIB33_RS19375 Genome accession   NZ_CP116391
Coordinates   3660578..3661267 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain GXD-20     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655578..3666267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS19340 (PIB33_19340) flgN 3655759..3656241 (-) 483 WP_032722609.1 flagellar protein FlgN -
  PIB33_RS19345 (PIB33_19345) flgM 3656257..3656523 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  PIB33_RS19350 (PIB33_19350) yvyF 3656604..3657023 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PIB33_RS19355 (PIB33_19355) comFC 3657096..3657818 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  PIB33_RS19360 (PIB33_19360) comFB 3657782..3658078 (-) 297 WP_015483764.1 late competence protein ComFB -
  PIB33_RS19365 (PIB33_19365) comFA 3658138..3659529 (-) 1392 WP_032722611.1 ATP-dependent helicase ComFA Machinery gene
  PIB33_RS19370 (PIB33_19370) fakBA 3659635..3660480 (-) 846 WP_003244125.1 DegV family protein -
  PIB33_RS19375 (PIB33_19375) degU 3660578..3661267 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PIB33_RS19380 (PIB33_19380) degS 3661350..3662507 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  PIB33_RS19385 (PIB33_19385) yvyE 3662724..3663377 (+) 654 WP_003227979.1 YigZ family protein -
  PIB33_RS19390 (PIB33_19390) tagV 3663377..3664552 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  PIB33_RS19395 (PIB33_19395) tagO 3664625..3665701 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=777050 PIB33_RS19375 WP_003219701.1 3660578..3661267(-) (degU) [Bacillus subtilis strain GXD-20]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=777050 PIB33_RS19375 WP_003219701.1 3660578..3661267(-) (degU) [Bacillus subtilis strain GXD-20]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1