Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   PIB33_RS19355 Genome accession   NZ_CP116391
Coordinates   3657096..3657818 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652096..3662818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS19320 (PIB33_19320) fliW 3652236..3652667 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  PIB33_RS19325 (PIB33_19325) yviE 3652688..3653263 (-) 576 WP_003243053.1 DUF6470 family protein -
  PIB33_RS19330 (PIB33_19330) flgL 3653310..3654206 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  PIB33_RS19335 (PIB33_19335) flgK 3654217..3655740 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  PIB33_RS19340 (PIB33_19340) flgN 3655759..3656241 (-) 483 WP_032722609.1 flagellar protein FlgN -
  PIB33_RS19345 (PIB33_19345) flgM 3656257..3656523 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  PIB33_RS19350 (PIB33_19350) yvyF 3656604..3657023 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  PIB33_RS19355 (PIB33_19355) comFC 3657096..3657818 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  PIB33_RS19360 (PIB33_19360) comFB 3657782..3658078 (-) 297 WP_015483764.1 late competence protein ComFB -
  PIB33_RS19365 (PIB33_19365) comFA 3658138..3659529 (-) 1392 WP_032722611.1 ATP-dependent helicase ComFA Machinery gene
  PIB33_RS19370 (PIB33_19370) fakBA 3659635..3660480 (-) 846 WP_003244125.1 DegV family protein -
  PIB33_RS19375 (PIB33_19375) degU 3660578..3661267 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PIB33_RS19380 (PIB33_19380) degS 3661350..3662507 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=777048 PIB33_RS19355 WP_014481051.1 3657096..3657818(-) (comFC) [Bacillus subtilis strain GXD-20]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=777048 PIB33_RS19355 WP_014481051.1 3657096..3657818(-) (comFC) [Bacillus subtilis strain GXD-20]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992