Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   PK654_RS14405 Genome accession   NZ_CP116383
Coordinates   3066499..3067131 (+) Length   210 a.a.
NCBI ID   WP_171752739.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061499..3072131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS14380 (PK654_14380) - 3061609..3063531 (+) 1923 WP_271696636.1 ABC transporter ATP-binding protein -
  PK654_RS14385 (PK654_14385) - 3063528..3063992 (+) 465 WP_271696637.1 TIGR02444 family protein -
  PK654_RS14390 (PK654_14390) - 3064124..3065113 (+) 990 WP_271696638.1 hydrolase -
  PK654_RS14395 (PK654_14395) - 3065110..3065322 (+) 213 WP_271696639.1 YheU family protein -
  PK654_RS14400 (PK654_14400) - 3065390..3066259 (+) 870 WP_271696640.1 phosphoribulokinase -
  PK654_RS14405 (PK654_14405) crp 3066499..3067131 (+) 633 WP_171752739.1 cAMP-activated global transcriptional regulator CRP Regulator
  PK654_RS14410 (PK654_14410) - 3067177..3068445 (-) 1269 WP_271696641.1 DUF1501 domain-containing protein -
  PK654_RS14415 (PK654_14415) - 3068501..3070093 (-) 1593 WP_271696642.1 DUF1800 domain-containing protein -
  PK654_RS14420 (PK654_14420) groL 3070388..3072034 (-) 1647 WP_271696643.1 chaperonin GroEL -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23595.38 Da        Isoelectric Point: 7.8387

>NTDB_id=776868 PK654_RS14405 WP_171752739.1 3066499..3067131(+) (crp) [Vibrio sp. SCSIO 43137]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELSLFAEE
QDRTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=776868 PK654_RS14405 WP_171752739.1 3066499..3067131(+) (crp) [Vibrio sp. SCSIO 43137]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAATGGTTTCTTTCACACTGTCATATCCATAAATACCCTTCAAA
GAGCACGCTGATTCACGCTGGTGAGAAAGCGGAAACTTTGTATTACATTGTGAAAGGCTCTGTAGCTGTGCTTATCAAGG
ATGAAGAAGGAAAAGAGATGATTCTTTCCTACCTGAATCAAGGTGACTTCATCGGTGAACTCAGTCTATTTGCAGAAGAA
CAAGACCGTACTGCTTGGGTACGTGCTAAATCCCCATGTGAAGTAGCCGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCTGATATCCTGATGCGCCTTTCTGCACAGATGGCTAACCGTCTACAGGTTACCAGCCAGAAAGTAGGTG
ACCTGGCATTCCTAGATGTAACTGGTCGCATCGCTCAGACGCTACTTAACCTAGCCAAACAACCTGATGCAATGACACAC
CCGGACGGTATGCAGATTAAGATTACCCGTCAGGAAATTGGTCAAATCGTAGGTTGTTCACGTGAAACCGTAGGCCGTAT
CCTTAAGATGCTGGAAGAGCAGAACCTTATCTCTGCTCACGGTAAAACCATTGTGGTTTACGGAACACGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

96.19

100

0.962
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.377

98.571

0.457