Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QWH96_RS00680 Genome accession   NZ_CP128987
Coordinates   113157..113585 (+) Length   142 a.a.
NCBI ID   WP_049519672.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 108157..118585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS00660 (QWH96_00660) - 110500..110865 (+) 366 WP_003055257.1 DUF1033 family protein -
  QWH96_RS00665 (QWH96_00665) comGA/cglA 110946..111887 (+) 942 WP_338433685.1 competence type IV pilus ATPase ComGA Machinery gene
  QWH96_RS00670 (QWH96_00670) comGB 111823..112854 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  QWH96_RS00675 (QWH96_00675) comGC 112856..113182 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  QWH96_RS00680 (QWH96_00680) comGD 113157..113585 (+) 429 WP_049519672.1 competence type IV pilus minor pilin ComGD Machinery gene
  QWH96_RS00685 (QWH96_00685) comGE 113593..113838 (+) 246 WP_049519695.1 competence type IV pilus minor pilin ComGE Machinery gene
  QWH96_RS00690 (QWH96_00690) comGF 113819..114259 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  QWH96_RS00695 (QWH96_00695) comGG 114282..114611 (+) 330 WP_338433753.1 competence type IV pilus minor pilin ComGG -
  QWH96_RS00700 (QWH96_00700) comGH 114674..115627 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  QWH96_RS00705 (QWH96_00705) - 115686..116882 (+) 1197 WP_003058485.1 acetate kinase -
  QWH96_RS00710 (QWH96_00710) - 117188..117394 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  QWH96_RS00715 (QWH96_00715) - 117497..118177 (+) 681 WP_012766451.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16416.87 Da        Isoelectric Point: 9.9660

>NTDB_id=776803 QWH96_RS00680 WP_049519672.1 113157..113585(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MRLKNCNLKAFTMLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDSIRIKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=776803 QWH96_RS00680 WP_049519672.1 113157..113585(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAAGAGTCGTTAACAATACCTGACTCGATAAGGATTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

38.971

95.775

0.373