Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PFX98_RS13220 Genome accession   NZ_CP116346
Coordinates   2848185..2848577 (+) Length   130 a.a.
NCBI ID   WP_285230966.1    Uniprot ID   -
Organism   Paucibacter sediminis strain S2-9     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2843185..2853577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFX98_RS13200 (PFX98_13200) mpl 2844059..2845435 (-) 1377 WP_285230963.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase -
  PFX98_RS13205 (PFX98_13205) hemL 2845488..2846774 (-) 1287 WP_285230964.1 glutamate-1-semialdehyde 2,1-aminomutase -
  PFX98_RS13210 (PFX98_13210) - 2846797..2847768 (-) 972 WP_285230965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PFX98_RS13215 (PFX98_13215) - 2847971..2848123 (+) 153 WP_133604594.1 rubredoxin -
  PFX98_RS13220 (PFX98_13220) pilG 2848185..2848577 (+) 393 WP_285230966.1 response regulator Regulator
  PFX98_RS13225 (PFX98_13225) - 2848650..2849015 (+) 366 WP_285230967.1 response regulator -
  PFX98_RS13230 (PFX98_13230) - 2849018..2849548 (+) 531 WP_285230968.1 chemotaxis protein CheW -
  PFX98_RS13235 (PFX98_13235) - 2849606..2851897 (+) 2292 WP_285230969.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14367.63 Da        Isoelectric Point: 8.4951

>NTDB_id=776797 PFX98_RS13220 WP_285230966.1 2848185..2848577(+) (pilG) [Paucibacter sediminis strain S2-9]
MAPQAPGAATKVLVIDDSNTIRRSAEIFLKQGGHEVVLAEDGFDALSKLSDYKPDLVFCDILMPRLDGYQTCAIIKRNPQ
FSGVPVIMLSSKDGLFDKARGRMVGSQDYLTKPFTKDQLLQAVQMHRRGP

Nucleotide


Download         Length: 393 bp        

>NTDB_id=776797 PFX98_RS13220 WP_285230966.1 2848185..2848577(+) (pilG) [Paucibacter sediminis strain S2-9]
ATGGCTCCCCAAGCACCTGGCGCAGCGACCAAGGTGCTCGTCATCGACGACAGCAACACCATCCGCCGCAGCGCCGAGAT
CTTTCTCAAGCAAGGCGGGCACGAGGTGGTGCTGGCCGAGGATGGCTTCGACGCGCTTTCCAAGCTGAGCGACTACAAAC
CCGATCTGGTGTTCTGCGACATCCTGATGCCGCGGCTCGACGGTTACCAGACCTGCGCCATCATCAAGCGCAACCCGCAG
TTTTCCGGCGTGCCGGTGATCATGCTGTCCAGCAAGGACGGTCTGTTCGACAAGGCGCGCGGCCGCATGGTGGGCTCGCA
GGATTACCTGACCAAGCCCTTCACCAAAGACCAATTGCTGCAGGCGGTGCAGATGCACCGCCGCGGCCCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.655

89.231

0.577
  pilH Synechocystis sp. PCC 6803

41.525

90.769

0.377
  vicR Streptococcus mutans UA159

40.678

90.769

0.369