Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PGH26_RS16000 Genome accession   NZ_CP116341
Coordinates   3168087..3168608 (-) Length   173 a.a.
NCBI ID   WP_323692002.1    Uniprot ID   -
Organism   Sporosarcina jeotgali strain B2O-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3163087..3173608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH26_RS15980 (PGH26_15995) rplI 3164240..3164686 (-) 447 WP_323691998.1 50S ribosomal protein L9 -
  PGH26_RS15985 (PGH26_16000) - 3164689..3166659 (-) 1971 WP_323691999.1 DHH family phosphoesterase -
  PGH26_RS15990 (PGH26_16005) - 3166672..3167610 (-) 939 WP_323692000.1 DUF2232 domain-containing protein -
  PGH26_RS15995 (PGH26_16010) rpsR 3167808..3168044 (-) 237 WP_323692001.1 30S ribosomal protein S18 -
  PGH26_RS16000 (PGH26_16015) ssbA 3168087..3168608 (-) 522 WP_323692002.1 single-stranded DNA-binding protein Machinery gene
  PGH26_RS16005 (PGH26_16020) rpsF 3168653..3168940 (-) 288 WP_323692003.1 30S ribosomal protein S6 -
  PGH26_RS16010 (PGH26_16025) - 3169120..3169692 (+) 573 WP_323692004.1 DUF3267 domain-containing protein -
  PGH26_RS16015 (PGH26_16030) ychF 3169804..3170904 (-) 1101 WP_323692005.1 redox-regulated ATPase YchF -
  PGH26_RS16020 (PGH26_16035) - 3170997..3171200 (-) 204 WP_323692006.1 DUF951 domain-containing protein -
  PGH26_RS16025 (PGH26_16040) yyaC 3171332..3171973 (+) 642 WP_323692007.1 spore protease YyaC -
  PGH26_RS16030 (PGH26_16045) - 3171884..3172588 (-) 705 WP_323692008.1 DUF554 domain-containing protein -
  PGH26_RS16035 (PGH26_16050) - 3172652..3173494 (-) 843 WP_323692009.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19240.98 Da        Isoelectric Point: 4.7915

>NTDB_id=776735 PGH26_RS16000 WP_323692002.1 3168087..3168608(-) (ssbA) [Sporosarcina jeotgali strain B2O-1]
MINRVVLVGRLTKDPELKYTQSGIAVTRFTLAVNRPFSSQSGEREADFINCVAWRKQAENTANFLRKGSLAGVDGRIQTS
NFEGQDGKRVFMTEVVADSVQFLEPRNANSERSGSQGGAPAYGNQQSDRPYNQNQQQNQPSYQPNQQNYTRTDEDPFQSG
GGPIEVSDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=776735 PGH26_RS16000 WP_323692002.1 3168087..3168608(-) (ssbA) [Sporosarcina jeotgali strain B2O-1]
ATGATTAACCGTGTCGTATTGGTCGGCCGATTGACAAAAGATCCTGAACTCAAATATACACAAAGTGGAATTGCGGTCAC
TCGCTTTACACTGGCTGTGAACAGACCGTTCTCAAGTCAGTCCGGCGAGCGTGAAGCTGATTTCATTAACTGTGTAGCTT
GGAGAAAACAGGCGGAAAACACTGCGAATTTCTTACGTAAGGGCAGTCTGGCTGGTGTAGACGGACGTATTCAGACAAGC
AATTTCGAAGGACAAGATGGCAAGCGTGTCTTCATGACAGAAGTTGTGGCAGATAGCGTGCAATTCTTAGAACCCCGTAA
TGCAAACTCTGAGCGGTCTGGCTCGCAAGGCGGAGCACCTGCTTACGGAAATCAGCAGTCTGACCGTCCGTATAATCAGA
ATCAGCAACAGAATCAGCCATCTTATCAGCCTAACCAGCAAAACTATACACGCACTGATGAAGATCCGTTTCAATCAGGC
GGCGGTCCGATTGAAGTATCGGACGATGATTTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.798

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

53.143

100

0.538
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364