Detailed information NTG0776325

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PI990_RS09960
• Genome accession: NZ_CP116239
• Coordinates: 2131619..2133841 (+)
• Length: 740 a.a.
• NCBI ID: WP_271660505.1
• Uniprot ID: -
• Organism: Pseudomonas sp. TUM22785
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2126619..2138841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PI990_RS09930 (PI990_09930)	-	2126692..2126985 (-)	294	WP_021219516.1	hypothetical protein	-
PI990_RS09935 (PI990_09935)	-	2126991..2127578 (-)	588	WP_021219515.1	PilZ domain-containing protein	-
PI990_RS09940 (PI990_09940)	-	2127674..2128924 (+)	1251	WP_043244256.1	lipoprotein-releasing ABC transporter permease subunit	-
PI990_RS09945 (PI990_09945)	lolD	2128926..2129609 (+)	684	WP_162164733.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
PI990_RS09950 (PI990_09950)	-	2129611..2130855 (+)	1245	WP_271660504.1	lipoprotein-releasing ABC transporter permease subunit	-
PI990_RS09955 (PI990_09955)	-	2130938..2131468 (-)	531	WP_021219511.1	DUF2062 domain-containing protein	-
PI990_RS09960 (PI990_09960)	comA	2131619..2133841 (+)	2223	WP_271660505.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PI990_RS09965 (PI990_09965)	exbB	2133914..2134549 (+)	636	WP_031287691.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PI990_RS09970 (PI990_09970)	-	2134546..2134986 (+)	441	WP_271660506.1	biopolymer transporter ExbD	-
PI990_RS09975 (PI990_09975)	lpxK	2134986..2135990 (+)	1005	WP_271660507.1	tetraacyldisaccharide 4'-kinase	-
PI990_RS09980 (PI990_09980)	-	2136032..2136217 (+)	186	WP_021219506.1	Trm112 family protein	-
PI990_RS09985 (PI990_09985)	kdsB	2136217..2136981 (+)	765	WP_271660508.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PI990_RS09990 (PI990_09990)	-	2136981..2137439 (+)	459	WP_271660509.1	low molecular weight protein-tyrosine-phosphatase	-
PI990_RS09995 (PI990_09995)	murB	2137436..2138455 (+)	1020	WP_271660510.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79288.72 Da
• Isoelectric Point: 10.1531

>NTDB_id=776325 PI990_RS09960 WP_271660505.1 2131619..2133841(+) (comA) [Pseudomonas sp. TUM22785]
MTGRLVALACGLASLRFMPGLPTGGWLLAAAVLGAVLLFTRLRLPGLFLLGGAWACFFAQQALDDRLAMALDGETRWLQG
QVVGLPQRDGGVVRFELEDAVAPGLRLPQRMRLSWYGGPEVRGGERWRLAVTLKRPRGLVNPHAFDYEAWLLARHTGATG
SVKAGEPLQRGSGPAAWRDRVRQGIESVPAHGRNGGIAALVLGDGSGVDSADWQLLQNTGTVHLMVISGQHIALLAAVLY
GAVALLARLGIWPRRLPWLPCACALAFVGSLGYGLLAGFDVPVQRSCLMTAIALLWRLRFRHLGVLRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLVLIFAGRLGVPPWWRSWWRAQWTMGLALSPLLLAMALPISLSGPLANLVAVPWVSLVSVPL
SLLGTALQGVPGVGAGLLWLAGGSLELLFRLLGWIAEWIPAWQATVVPVWAWLLGILGCLLLIVPAGMPVRALGLALLLP
TLFPPVERPAWGKADIWLLDVGQGLSVLVRTREHALLYDAGARRGDFDMGERVVLPSLLGLGVRRLDQMLLSHADNDHAG
GAGAVMRGMPVARVVSGEPERLPASLGAEACRDQAWEWDGVRLRTWRWEVARTGNDRSCVLSVEARGERIHLTGDIGAQA
EAAWIASGESLHADWLLAPHHGSASSSSAALIGAVAPRGALITRGSHNAFGHPHPTVIARYRAAGAVIHDTAESGALLIR
LGEGDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=776325 PI990_RS09960 WP_271660505.1 2131619..2133841(+) (comA) [Pseudomonas sp. TUM22785]
ATGACGGGGAGGTTGGTTGCGCTGGCCTGCGGGTTGGCCTCGCTGCGTTTCATGCCGGGGTTGCCGACGGGCGGCTGGCT
TCTGGCGGCGGCGGTGCTGGGCGCCGTTCTTCTATTCACACGGCTACGGCTGCCGGGGCTGTTCCTCCTGGGCGGCGCCT
GGGCCTGCTTCTTTGCCCAGCAGGCCCTAGATGATCGCCTGGCCATGGCCCTGGATGGCGAGACTCGTTGGCTGCAAGGG
CAGGTTGTCGGCCTGCCGCAGCGGGATGGTGGGGTGGTGCGTTTCGAGCTGGAGGATGCCGTCGCCCCCGGATTGCGCTT
GCCGCAGCGCATGCGCCTGTCCTGGTATGGCGGGCCCGAGGTGCGCGGGGGCGAGCGCTGGCGCCTGGCGGTGACCCTGA
AGCGCCCCCGGGGCCTGGTGAACCCCCACGCATTCGACTACGAAGCCTGGCTGCTGGCCCGCCATACCGGCGCCACCGGC
TCGGTGAAGGCGGGCGAGCCGTTGCAGCGGGGCAGTGGCCCGGCTGCCTGGCGTGACCGCGTGCGCCAGGGTATAGAAAG
TGTGCCCGCCCATGGCCGCAATGGTGGCATCGCCGCGCTGGTGCTGGGAGATGGCTCGGGCGTCGACAGCGCGGACTGGC
AGTTGCTGCAGAACACCGGGACGGTGCACCTGATGGTGATTTCCGGCCAGCACATCGCCTTGCTCGCGGCGGTGCTGTAC
GGAGCTGTGGCGTTGCTGGCCCGGCTCGGCATTTGGCCCCGACGCCTGCCGTGGTTGCCTTGTGCCTGTGCGCTGGCCTT
CGTCGGCTCGCTGGGTTACGGACTCCTCGCCGGCTTCGACGTGCCGGTGCAGCGCTCCTGCCTGATGACCGCCATCGCGC
TGCTGTGGCGCCTGCGCTTTCGTCACCTGGGCGTGCTGCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCCGAT
CCGCTGGCGTCGCTGCAGGCGGGGTTCTGGTTGTCCTTCGGGGCCGTGGCATTGCTGGTGCTGATCTTCGCCGGACGCCT
GGGCGTGCCGCCCTGGTGGCGCAGTTGGTGGCGCGCGCAATGGACCATGGGCCTGGCGCTGTCGCCCTTGCTGCTAGCCA
TGGCACTGCCCATCAGCCTGAGCGGCCCGCTGGCCAACCTGGTGGCGGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTG
TCTTTATTAGGCACGGCCCTGCAGGGCGTGCCCGGGGTGGGGGCGGGATTGCTGTGGCTGGCGGGCGGTTCGCTGGAACT
GTTGTTCCGCTTGCTGGGCTGGATAGCGGAATGGATTCCCGCCTGGCAGGCGACCGTCGTTCCCGTCTGGGCCTGGCTGC
TGGGCATACTCGGTTGCCTGCTGCTGATCGTGCCGGCCGGGATGCCGGTGCGGGCTTTGGGGTTGGCGTTGTTGTTGCCA
ACGCTGTTTCCGCCGGTGGAGCGCCCGGCCTGGGGGAAGGCGGATATCTGGTTGCTGGATGTGGGGCAGGGGCTGTCGGT
GCTGGTGCGCACGCGGGAGCACGCGCTGCTCTACGACGCTGGCGCGCGGCGGGGTGATTTCGACATGGGCGAGCGCGTGG
TGTTGCCCAGCCTGCTGGGGCTGGGTGTGCGGCGCCTGGACCAGATGCTCCTCAGCCATGCCGACAACGACCACGCGGGT
GGCGCCGGTGCCGTGATGCGTGGCATGCCGGTGGCACGGGTGGTGAGCGGCGAGCCGGAGCGCCTGCCGGCCAGCCTGGG
GGCCGAGGCCTGCCGTGACCAGGCCTGGGAATGGGACGGCGTGCGCCTGCGAACCTGGCGCTGGGAGGTCGCGCGCACCG
GCAACGACCGCTCCTGTGTGCTCAGTGTGGAGGCGCGGGGCGAGCGCATTCACCTGACCGGCGATATCGGTGCCCAGGCC
GAAGCCGCCTGGATTGCCAGTGGTGAGTCCTTGCACGCCGATTGGCTGCTGGCGCCGCACCATGGCAGCGCCAGCTCTTC
ATCGGCGGCGCTCATTGGCGCAGTGGCTCCACGTGGTGCGCTGATTACCCGCGGCAGTCACAACGCTTTCGGCCACCCAC
ACCCGACCGTGATCGCCCGTTACCGGGCGGCGGGCGCTGTAATCCACGACACGGCGGAGTCCGGTGCGTTGCTGATCCGC
CTTGGTGAAGGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-166)

• Competence protein (Competence) (200-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.028	97.297	0.623
comA	Ralstonia pseudosolanacearum GMI1000	36.41	100	0.384