Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PI990_RS09965 Genome accession   NZ_CP116239
Coordinates   2133914..2134549 (+) Length   211 a.a.
NCBI ID   WP_031287691.1    Uniprot ID   A0AAU7Y816
Organism   Pseudomonas sp. TUM22785     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128914..2139549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PI990_RS09945 (PI990_09945) lolD 2128926..2129609 (+) 684 WP_162164733.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  PI990_RS09950 (PI990_09950) - 2129611..2130855 (+) 1245 WP_271660504.1 lipoprotein-releasing ABC transporter permease subunit -
  PI990_RS09955 (PI990_09955) - 2130938..2131468 (-) 531 WP_021219511.1 DUF2062 domain-containing protein -
  PI990_RS09960 (PI990_09960) comA 2131619..2133841 (+) 2223 WP_271660505.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PI990_RS09965 (PI990_09965) exbB 2133914..2134549 (+) 636 WP_031287691.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PI990_RS09970 (PI990_09970) - 2134546..2134986 (+) 441 WP_271660506.1 biopolymer transporter ExbD -
  PI990_RS09975 (PI990_09975) lpxK 2134986..2135990 (+) 1005 WP_271660507.1 tetraacyldisaccharide 4'-kinase -
  PI990_RS09980 (PI990_09980) - 2136032..2136217 (+) 186 WP_021219506.1 Trm112 family protein -
  PI990_RS09985 (PI990_09985) kdsB 2136217..2136981 (+) 765 WP_271660508.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PI990_RS09990 (PI990_09990) - 2136981..2137439 (+) 459 WP_271660509.1 low molecular weight protein-tyrosine-phosphatase -
  PI990_RS09995 (PI990_09995) murB 2137436..2138455 (+) 1020 WP_271660510.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.09 Da        Isoelectric Point: 6.7295

>NTDB_id=776326 PI990_RS09965 WP_031287691.1 2133914..2134549(+) (exbB) [Pseudomonas sp. TUM22785]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLVVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=776326 PI990_RS09965 WP_031287691.1 2133914..2134549(+) (exbB) [Pseudomonas sp. TUM22785]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATTATCGT
GGAGCGTCTGTGGACGCTTCGCGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCCCAGAAGCTCAAGGAGCTGCGTGCGTCTTCCCCGCTGGGTGAGATCCTCGCGGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCCGCTTCCCGCGTCATCCACGAACTGGAGCGCTACCT
CAACACCCTGGGCACCATCGCCGCGATGGGCCCGCTGTTGGGCCTGTTGGGCACCGTGTTCGGCATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCCAACGCTCCGGCACTGGCTGGCGGTATTGGCAAGGCTCTGATTACCACTGCAGCG
GGCCTGGTGGTCGCTATCCCTGCGGTGTTCTTCCATCGTTTCCTGCTGCGTCGCGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGTGATCGTGAAGTGGACTTCGCAGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82