Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilY1   Type   Machinery gene
Locus tag   H7R46_RS01680 Genome accession   NZ_AP022302
Coordinates   354873..358727 (+) Length   1284 a.a.
NCBI ID   WP_005067129.1    Uniprot ID   -
Organism   Acinetobacter sp. BEC1-S18-ESBL-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 349873..363727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R46_RS01650 (BE1S18E01_03140) gmk 350155..350784 (-) 630 WP_002116973.1 guanylate kinase -
  H7R46_RS01655 (BE1S18E01_03150) ispH 350907..351857 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7R46_RS01660 (BE1S18E01_03160) fimU 352027..352500 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7R46_RS01665 (BE1S18E01_03170) pilV 352494..353054 (+) 561 WP_080631029.1 type IV pilus modification protein PilV Machinery gene
  H7R46_RS01670 (BE1S18E01_03180) pilW 353054..354055 (+) 1002 WP_005067125.1 PilW family protein Machinery gene
  H7R46_RS01675 (BE1S18E01_03190) pilX 354052..354861 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7R46_RS01680 (BE1S18E01_03200) pilY1 354873..358727 (+) 3855 WP_005067129.1 PilC/PilY family type IV pilus protein Machinery gene
  H7R46_RS01685 (BE1S18E01_03210) pilY2 358738..359220 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  H7R46_RS01690 (BE1S18E01_03220) pilE 359217..359642 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  H7R46_RS01695 (BE1S18E01_03230) rpsP 359790..360041 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H7R46_RS01700 (BE1S18E01_03240) rimM 360061..360609 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  H7R46_RS01705 (BE1S18E01_03250) trmD 360652..361407 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H7R46_RS01710 (BE1S18E01_03260) rplS 361627..361995 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  H7R46_RS01715 (BE1S18E01_03270) - 362047..362988 (-) 942 WP_080591800.1 lipase family alpha/beta hydrolase -

Sequence


Protein


Download         Length: 1284 a.a.        Molecular weight: 137862.34 Da        Isoelectric Point: 7.5997

>NTDB_id=77631 H7R46_RS01680 WP_005067129.1 354873..358727(+) (pilY1) [Acinetobacter sp. BEC1-S18-ESBL-01]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIRRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRRSDDNCSPNQTTNAVTAPGYGNGGFFPTQSAQGVTDSVIAFINNLEKVPLQPLTTGAISVPYDALNPKNLQEY
GYLRALEPNPANTYLTWRGNLKKYHVVLSGGNAGAFEANTGGLVYNASGAFRTGTKDYWNSSNYNDGGNVFLGGSYAKVP
LPIAGQNETRDEDGNIIKYYYAVQTKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPATPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPIGLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHLVDASTGVEQMAFVPADILNDPIASKALVVGQSDASAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPVSPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLADNQLETKDITRLTLRKNPQILRSGETRVAQIFFPNTGVGQSGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAVTGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGVTFVPTEDNPPATNSCGKLKLSGNESGTGEWQCTSHLVPARWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=77631 H7R46_RS01680 WP_005067129.1 354873..358727(+) (pilY1) [Acinetobacter sp. BEC1-S18-ESBL-01]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCTATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTCTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGAGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACCTATTCAGAGGCAAATTATGCCATTCGAAAAGATAGCTATATAAGGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGTTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAATGA
TACAGCTAGCAATCCCAATATTGTTGTAGATAGAAATGCCTCCAATTTAAATGCTATTTACCAATCTCCTTTACCTGCAG
TGGCCAATCGCCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGAGAACCGAACAATACCACAAATACACGT
TCGGCAACTGTAATGTCGACAGCCCTAGGCAGTACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACTAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAACCCAGCTGGAGTGTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGACCGTAGAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCACTGCACCTGGTTA
TGGAAATGGAGGCTTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGACAGTGTTATCGCATTTATTAATAACTTAGAAA
AAGTTCCGTTACAACCCTTAACCACTGGCGCTATCTCAGTTCCTTATGATGCACTAAACCCTAAAAATTTACAGGAATAT
GGTTACTTACGGGCTTTAGAGCCAAACCCAGCTAACACATACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGT
TTTATCAGGGGGCAATGCAGGTGCTTTTGAAGCTAACACTGGTGGGTTGGTTTACAATGCAAGTGGGGCTTTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTAATTATAATGATGGAGGTAACGTCTTTTTAGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGATGGAAATATCATAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCTGTTGCGGCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAAAATTCCAGCTACTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACTGGACAAGATATTTTAAAAGCTTTCCCGATTGGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
TTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCATTCTTTACCGGTGCAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGAACAATCT
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATCTTGTGGATGCTTCAACTGGCGTAGAACAAATGGCTTTCGTTCCGGC
TGATATATTAAATGATCCAATTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCCTCAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACGGGAAGCGGTAGCTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGTGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGTCTCACC
TAAGCTCCTGTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGCATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGAGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGTAATTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTGGTAGACCATTTATATTTTGGCGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCGAATTTAGCAACAAATGA
CTCAACTTATGATGCTTCGAATGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCATG
ATTATGGAATCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAATGTCTATGGGATTATCGATAAAGACTT
TATCAAAAAGAATTTAATGTCTTTAGCTGATAACCAACTTGAAACAAAAGATATTACTCGATTGACGCTTCGAAAAAATC
CACAAATTTTACGGTCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACACTGGGGTGGGGCAAAGTGGTTGGTAT
CGCTCACTTTCTAGTATGAGCGATGGCACAGAGAAAGCTAATAATAGTTTCCGTATTAAAGGTGGACTGAAAGCTTTTGA
AGAACCTATGGCCGTTACGGGGACTTTAATTGTGCCTGTTTATGATCCGCAGGGAACAGGCATTGTAGCGGCAGACCCAT
GTTTACCACGTGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCA
ATTGATCAAAATAAAGAGAATGGAAGTGGATTCAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCCGAATGTAA
TAAAAACGTTATTGGCTCCGGTATTCGTGGCGTAACATTTGTACCAACGGAGGATAACCCACCTGCGACTAATAGTTGTG
GGAAATTAAAGCTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTAT
GAGCGTTATCGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.884

100

0.853


Multiple sequence alignment