Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PGW89_RS06970 Genome accession   NZ_CP116040
Coordinates   1488121..1489551 (+) Length   476 a.a.
NCBI ID   WP_113997842.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483121..1494551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS06950 (PGW89_06950) thrC 1483405..1484544 (+) 1140 WP_004637599.1 threonine synthase -
  PGW89_RS06955 (PGW89_06955) pbpG 1484604..1485668 (-) 1065 WP_004637598.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PGW89_RS06960 (PGW89_06960) - 1485879..1486514 (+) 636 WP_005083960.1 response regulator -
  PGW89_RS06965 (PGW89_06965) pilS 1486533..1488098 (+) 1566 WP_113997841.1 ATP-binding protein Regulator
  PGW89_RS06970 (PGW89_06970) pilR 1488121..1489551 (+) 1431 WP_113997842.1 sigma-54 dependent transcriptional regulator Regulator
  PGW89_RS06975 (PGW89_06975) - 1489592..1490758 (-) 1167 WP_113997843.1 S41 family peptidase -
  PGW89_RS06980 (PGW89_06980) gpmI 1490768..1492312 (-) 1545 WP_008942248.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  PGW89_RS06985 (PGW89_06985) lptG 1492437..1493507 (-) 1071 WP_113997844.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53535.50 Da        Isoelectric Point: 6.1502

>NTDB_id=775491 PGW89_RS06970 WP_113997842.1 1488121..1489551(+) (pilR) [Acinetobacter haemolyticus strain HW-2]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDEAIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPSTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDDT

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=775491 PGW89_RS06970 WP_113997842.1 1488121..1489551(+) (pilR) [Acinetobacter haemolyticus strain HW-2]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGACTTGTGTCTTCTCATGCAAATGACACTTGCGCG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTACCCAAATACTCCGATC
GCTGTGCTGACAGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCTGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTCCTGATTGGACGTTCTGCGCCGATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACCGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCACCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCAATTCCAACAGAACTGATGGAAAGCGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGTCACCAAGATCTTGAGCTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGCCAAGAATGGGAACTGCCTGCCAAGACGTTATCGTCTCGTGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCAATCACGCTCAGCGATGATG
AAGCGATTGATCTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAGCACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACCCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GGATGACCTTCCGTTCTTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGACACCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.244

100

0.842
  pilR Pseudomonas aeruginosa PAK

51.62

97.269

0.502