Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PGW89_RS06965 Genome accession   NZ_CP116040
Coordinates   1486533..1488098 (+) Length   521 a.a.
NCBI ID   WP_113997841.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481533..1493098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS06945 (PGW89_06945) - 1482045..1483346 (+) 1302 WP_026056262.1 homoserine dehydrogenase -
  PGW89_RS06950 (PGW89_06950) thrC 1483405..1484544 (+) 1140 WP_004637599.1 threonine synthase -
  PGW89_RS06955 (PGW89_06955) pbpG 1484604..1485668 (-) 1065 WP_004637598.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  PGW89_RS06960 (PGW89_06960) - 1485879..1486514 (+) 636 WP_005083960.1 response regulator -
  PGW89_RS06965 (PGW89_06965) pilS 1486533..1488098 (+) 1566 WP_113997841.1 ATP-binding protein Regulator
  PGW89_RS06970 (PGW89_06970) pilR 1488121..1489551 (+) 1431 WP_113997842.1 sigma-54 dependent transcriptional regulator Regulator
  PGW89_RS06975 (PGW89_06975) - 1489592..1490758 (-) 1167 WP_113997843.1 S41 family peptidase -
  PGW89_RS06980 (PGW89_06980) gpmI 1490768..1492312 (-) 1545 WP_008942248.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59487.55 Da        Isoelectric Point: 6.5501

>NTDB_id=775490 PGW89_RS06965 WP_113997841.1 1486533..1488098(+) (pilS) [Acinetobacter haemolyticus strain HW-2]
MLGKVASSVSQTIYQLGMWYSGYRLIISVCLLLIFLLTAEQLTTNYLYPTLYSYTLIVYIALNVSQLLFLKLFPTHVNKQ
LIAIFLVDVICLSTITFATGGPNLQLSLLYVIIIFASAILLNAQLSLVVTLLAVIMIVYQRFLGNLFDYNNLNHLSNSLL
LVFLFLVVYAIGRIAVQRFKILEALTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPVSHE
KTPLIKWQPDLFELIKFSDLEDGEEFTFESQQSLYTVHVRVKHLVVPEQALVLLILKDAQKLTQRVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFNESDAHQQQMLSRMIRKQAKRIDRIVEDTLAMARNKPTEPQNIHLMEFFESLFEEDLVDVK
HMIQLELSENIQILFDDKQLRQVLINLVRNALRHNASDIPYIEIKVHAEETKVRIDVIDFGLGVAKRDLSQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSIIN

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=775490 PGW89_RS06965 WP_113997841.1 1486533..1488098(+) (pilS) [Acinetobacter haemolyticus strain HW-2]
ATGTTGGGAAAAGTTGCATCTTCGGTGTCACAAACCATTTACCAGCTTGGGATGTGGTATAGCGGATATCGCCTCATTAT
TTCCGTATGCCTATTGCTCATTTTCTTGTTAACTGCTGAGCAACTGACCACCAATTATCTTTACCCAACATTGTATTCAT
ATACGCTGATTGTCTATATTGCATTAAATGTCAGTCAGCTTTTATTTCTTAAATTATTTCCGACCCACGTGAATAAACAG
CTGATTGCGATCTTTCTTGTCGATGTCATCTGTTTAAGTACCATTACCTTTGCAACAGGCGGGCCAAACTTACAGCTCAG
TTTGCTTTATGTCATTATTATTTTTGCCTCGGCAATTTTATTGAATGCTCAGCTTTCTCTAGTGGTAACGCTGCTCGCTG
TTATCATGATTGTGTATCAGCGTTTTCTGGGAAATTTATTTGACTACAACAATTTAAACCATCTCAGTAATAGCCTGCTG
TTGGTATTTTTATTCTTGGTGGTATATGCCATAGGGCGTATTGCAGTACAGCGTTTTAAAATTTTAGAAGCGCTTACTTT
TCATCAATCCATTGAAATTCATCAACTCCAAAACATTAACCGTTATATCTTGGAGCAAATTGAGGATGGATATCTGGTTT
TAGATGAAAGTAATCATATTGTTTTAACCAATCCTGCTGCCAATACATTATTAGGTATTCATTTACCTGTTTCCCATGAA
AAAACGCCCTTAATCAAATGGCAACCCGATCTATTTGAACTGATCAAATTCAGCGACCTAGAAGATGGTGAAGAGTTCAC
TTTTGAGTCACAACAAAGTTTGTATACCGTCCATGTACGTGTCAAACATTTGGTCGTACCTGAACAAGCATTAGTTTTAT
TAATTCTCAAAGATGCTCAGAAATTAACTCAGCGTGTACAACAACTCAAACTAGCGGCACTTGGTCAACTTTCTGCCAGT
ATTGCACATGAAATTCGCAATCCTTTAGCCGCGATTGTGCAAGCCAATGAGCTTTTTAATGAAAGCGATGCGCATCAACA
ACAAATGCTCTCTCGTATGATTCGTAAACAAGCAAAACGTATCGATCGGATTGTAGAAGATACTTTGGCAATGGCACGCA
ATAAACCGACCGAACCACAAAATATTCATCTTATGGAGTTCTTTGAAAGTTTATTTGAAGAGGATCTAGTCGATGTCAAA
CACATGATCCAATTAGAGCTTTCAGAAAATATTCAAATCTTATTTGATGACAAACAGTTGCGCCAAGTGCTGATTAATTT
GGTGAGAAATGCATTAAGACACAACGCATCGGATATACCTTATATCGAAATTAAAGTACACGCTGAAGAGACTAAAGTTC
GAATTGATGTTATCGATTTTGGTTTAGGGGTAGCAAAAAGAGACCTTTCTCAACTGTTTAAACCATTTTTTAGTACCGAA
ATCAAAGGAACTGGTTTAGGATTGTATTTGTCTCATAGTTTCTGTGAGGCGAATCATGCAAAGCTCACTTATGTAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAATAATTAATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.631

98.848

0.649