Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PGW89_RS05250 Genome accession   NZ_CP116040
Coordinates   1133839..1134264 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1128839..1139264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS05220 (PGW89_05220) - 1128921..1129190 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  PGW89_RS05225 (PGW89_05225) rapZ 1129187..1130038 (-) 852 WP_004637956.1 RNase adapter RapZ -
  PGW89_RS05230 (PGW89_05230) panC 1130067..1130912 (-) 846 WP_004637955.1 pantoate--beta-alanine ligase -
  PGW89_RS05235 (PGW89_05235) panB 1130916..1131725 (-) 810 WP_004637954.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  PGW89_RS05240 (PGW89_05240) folK 1131765..1132253 (-) 489 WP_004637953.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  PGW89_RS05245 (PGW89_05245) pcnB 1132250..1133701 (-) 1452 WP_004637952.1 polynucleotide adenylyltransferase PcnB -
  PGW89_RS05250 (PGW89_05250) comEA 1133839..1134264 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  PGW89_RS05255 (PGW89_05255) mazG 1134233..1135039 (-) 807 WP_004637950.1 nucleoside triphosphate pyrophosphohydrolase -
  PGW89_RS05260 (PGW89_05260) - 1135136..1135912 (+) 777 WP_113997720.1 SDR family oxidoreductase -
  PGW89_RS05265 (PGW89_05265) - 1136271..1136699 (+) 429 WP_005085309.1 hypothetical protein -
  PGW89_RS05270 (PGW89_05270) - 1136826..1139132 (-) 2307 WP_004637947.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=775482 PGW89_RS05250 WP_005092347.1 1133839..1134264(-) (comEA) [Acinetobacter haemolyticus strain HW-2]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=775482 PGW89_RS05250 WP_005092347.1 1133839..1134264(-) (comEA) [Acinetobacter haemolyticus strain HW-2]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAACAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAGGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426