Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PGA57_RS07475 Genome accession   NZ_CP116016
Coordinates   1442518..1443852 (-) Length   444 a.a.
NCBI ID   WP_100069772.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437518..1448852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS07460 (PGA57_07460) secA 1438581..1440944 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  PGA57_RS07465 (PGA57_07465) hpf 1441173..1441718 (-) 546 WP_004270226.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PGA57_RS07470 (PGA57_07470) - 1441844..1442428 (-) 585 WP_052202761.1 ComF family protein -
  PGA57_RS07475 (PGA57_07475) comFA 1442518..1443852 (-) 1335 WP_100069772.1 DEAD/DEAH box helicase Machinery gene
  PGA57_RS07480 (PGA57_07480) - 1443909..1444571 (+) 663 WP_039099348.1 YigZ family protein -
  PGA57_RS07485 (PGA57_07485) - 1444596..1445684 (-) 1089 WP_004270225.1 glycosyltransferase family 4 protein -
  PGA57_RS07490 (PGA57_07490) hemH 1445794..1446507 (-) 714 WP_333780831.1 ferrochelatase -
  PGA57_RS07495 (PGA57_07495) rny 1446741..1448303 (-) 1563 WP_271259953.1 ribonuclease Y -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49808.01 Da        Isoelectric Point: 9.4775

>NTDB_id=775327 PGA57_RS07475 WP_100069772.1 1442518..1443852(-) (comFA) [Latilactobacillus curvatus strain SRCM217410]
MMAKQLAYGRQWSATQLSTVMNNYSLPQIKQRLAFQIVNQRLVCQRCGQVVKEQARLPDGRYYCAACLTFGRLVEGDQLV
YVPECNLFESIVEPLTWSGTLTPFQAQAAKQIVAVITKQQRHVLTAVTGAGKTEMLFQGIATALANGQRVCVAAPRVAVC
LELYPRLQAAFANTPIMLMHGEQTAPYRYTPLVVCTTHQLFKFYQAFDTVIVDEVDAFPFVNNPQLEMAVKQACKPCCAL
IYLTATPTVKLRHAINTGDLTGSELPIRFHGHLLPEPHCYPLFTWRRSVKRHQLPSVMRNLLRKCLQEQRLLLFVPQVRD
LEAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGCGDVLITTTVLERGVTFKNIAVFVLGAEHVVFTESVLVQIAGR
AGRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=775327 PGA57_RS07475 WP_100069772.1 1442518..1443852(-) (comFA) [Latilactobacillus curvatus strain SRCM217410]
ATGATGGCAAAACAACTTGCTTATGGTCGTCAGTGGAGTGCCACCCAATTGAGTACCGTTATGAATAATTATAGTTTACC
ACAGATTAAACAGCGACTAGCGTTTCAAATAGTTAATCAGCGTCTGGTATGTCAACGGTGTGGACAAGTGGTGAAAGAGC
AAGCTCGCTTACCTGATGGTCGGTATTATTGTGCTGCTTGCTTGACCTTTGGGCGGTTAGTGGAAGGGGATCAGTTGGTT
TACGTGCCTGAATGCAATCTGTTTGAGTCGATCGTAGAACCGCTAACTTGGTCGGGGACACTAACCCCTTTTCAAGCACA
AGCCGCAAAGCAGATTGTTGCGGTCATTACCAAGCAACAACGCCATGTCTTAACTGCAGTGACCGGTGCTGGTAAAACTG
AGATGTTATTTCAAGGCATTGCGACGGCTTTAGCTAATGGGCAGCGTGTGTGTGTTGCTGCGCCGCGGGTGGCGGTTTGT
TTAGAACTCTATCCGCGCTTGCAAGCAGCGTTTGCTAATACACCAATCATGCTGATGCATGGGGAACAGACTGCGCCTTA
CCGGTATACGCCGTTAGTTGTTTGTACAACCCATCAGTTATTTAAGTTTTATCAGGCATTTGACACTGTCATTGTCGATG
AGGTTGATGCGTTCCCATTTGTCAATAATCCCCAGCTTGAGATGGCTGTTAAACAGGCGTGTAAGCCATGCTGTGCATTG
ATCTATCTGACGGCGACACCAACTGTAAAGTTGCGCCATGCGATTAATACAGGGGATTTAACGGGTAGTGAGCTACCAAT
TCGCTTTCATGGTCACTTATTACCTGAACCGCATTGCTATCCCTTGTTTACGTGGCGGCGTTCAGTTAAACGGCATCAGT
TACCATCCGTGATGCGTAACTTACTCAGGAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGAT
TTAGAGGCGGTTCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCA
ATTAGACAAGATAGCGGCCTTTAGAGCAGGATGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGT
TTAAAAATATTGCGGTGTTTGTTCTTGGTGCAGAACACGTGGTCTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGA
GCCGGACGACAGCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTACGCGGATTACACGGTCGCTATTCAGCGTGCGTG
TCAACAAATTAAACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(298-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.682

99.099

0.651
  comFA/cflA Streptococcus mitis NCTC 12261

40.796

90.541

0.369
  comFA/cflA Streptococcus pneumoniae TIGR4

40.594

90.991

0.369
  comFA/cflA Streptococcus pneumoniae Rx1

40.347

90.991

0.367
  comFA/cflA Streptococcus pneumoniae D39

40.347

90.991

0.367
  comFA/cflA Streptococcus pneumoniae R6

40.347

90.991

0.367
  comFA/cflA Streptococcus mitis SK321

40.099

90.991

0.365
  comFA Bacillus subtilis subsp. subtilis str. 168

38.554

93.468

0.36