Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PGA57_RS00035 Genome accession   NZ_CP116016
Coordinates   7217..7729 (+) Length   170 a.a.
NCBI ID   WP_146955135.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 7217..17801 7217..7729 within 0


Gene organization within MGE regions


Location: 7217..17801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS00035 (PGA57_00035) ssb 7217..7729 (+) 513 WP_146955135.1 single-stranded DNA-binding protein Machinery gene
  PGA57_RS00040 (PGA57_00040) rpsR 7760..7999 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  PGA57_RS00045 (PGA57_00045) - 8216..10246 (+) 2031 WP_069467795.1 DHH family phosphoesterase -
  PGA57_RS00050 (PGA57_00050) rplI 10268..10720 (+) 453 WP_064776768.1 50S ribosomal protein L9 -
  PGA57_RS00055 (PGA57_00055) dnaB 10865..12268 (+) 1404 WP_271260191.1 replicative DNA helicase -
  PGA57_RS00060 (PGA57_00060) - 12588..13517 (+) 930 WP_003592463.1 IS30-like element ISLpl1 family transposase -
  PGA57_RS00065 (PGA57_00065) - 13689..15035 (-) 1347 WP_069467796.1 nucleobase:cation symporter-2 family protein -
  PGA57_RS00070 (PGA57_00070) rsmG 15403..16143 (+) 741 WP_064776763.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  PGA57_RS00075 (PGA57_00075) noc 16143..17021 (+) 879 WP_004265810.1 nucleoid occlusion protein -
  PGA57_RS00080 (PGA57_00080) - 17034..17801 (+) 768 WP_004265824.1 ParA family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18651.19 Da        Isoelectric Point: 4.6856

>NTDB_id=775304 PGA57_RS00035 WP_146955135.1 7217..7729(+) (ssb) [Latilactobacillus curvatus strain SRCM217410]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQTDPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=775304 PGA57_RS00035 WP_146955135.1 7217..7729(+) (ssb) [Latilactobacillus curvatus strain SRCM217410]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAACCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

96.471

100

0.965
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371