Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   PF996_RS16690 Genome accession   NZ_CP116014
Coordinates   3235247..3235387 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain SRCM124633     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3230247..3240387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS16665 (PF996_16665) - 3230544..3230927 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  PF996_RS16670 (PF996_16670) comA 3230949..3231593 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  PF996_RS16675 (PF996_16675) comP 3231674..3233977 (-) 2304 WP_070082286.1 histidine kinase Regulator
  PF996_RS16685 (PF996_16685) comQ 3234130..3235062 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  PF996_RS16690 (PF996_16690) degQ 3235247..3235387 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PF996_RS16695 (PF996_16695) - 3235852..3236193 (+) 342 WP_257989027.1 hypothetical protein -
  PF996_RS16700 (PF996_16700) - 3236200..3237423 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  PF996_RS16705 (PF996_16705) - 3237553..3239019 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  PF996_RS16710 (PF996_16710) - 3239037..3239588 (-) 552 WP_123117419.1 cysteine hydrolase family protein -
  PF996_RS16715 (PF996_16715) - 3239685..3240083 (-) 399 WP_065180454.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=775289 PF996_RS16690 WP_003152043.1 3235247..3235387(-) (degQ) [Bacillus velezensis strain SRCM124633]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=775289 PF996_RS16690 WP_003152043.1 3235247..3235387(-) (degQ) [Bacillus velezensis strain SRCM124633]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891