Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PF996_RS16670 Genome accession   NZ_CP116014
Coordinates   3230949..3231593 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain SRCM124633     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3225949..3236593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS16635 (PF996_16635) - 3227134..3227565 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  PF996_RS16640 (PF996_16640) - 3227565..3227906 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  PF996_RS16645 (PF996_16645) - 3227899..3229380 (+) 1482 WP_070082284.1 Na+/H+ antiporter subunit D -
  PF996_RS16650 (PF996_16650) - 3229386..3229862 (+) 477 WP_070082285.1 Na+/H+ antiporter subunit E -
  PF996_RS16655 (PF996_16655) - 3229862..3230146 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  PF996_RS16660 (PF996_16660) mnhG 3230130..3230504 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  PF996_RS16665 (PF996_16665) - 3230544..3230927 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  PF996_RS16670 (PF996_16670) comA 3230949..3231593 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  PF996_RS16675 (PF996_16675) comP 3231674..3233977 (-) 2304 WP_070082286.1 histidine kinase Regulator
  PF996_RS16685 (PF996_16685) comQ 3234130..3235062 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  PF996_RS16690 (PF996_16690) degQ 3235247..3235387 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PF996_RS16695 (PF996_16695) - 3235852..3236193 (+) 342 WP_257989027.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=775286 PF996_RS16670 WP_014418762.1 3230949..3231593(-) (comA) [Bacillus velezensis strain SRCM124633]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=775286 PF996_RS16670 WP_014418762.1 3230949..3231593(-) (comA) [Bacillus velezensis strain SRCM124633]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86