Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   PF996_RS13295 Genome accession   NZ_CP116014
Coordinates   2609355..2609663 (-) Length   102 a.a.
NCBI ID   WP_014418376.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124633     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2604355..2614663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS13245 (PF996_13245) sinR 2604518..2604853 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  PF996_RS13250 (PF996_13250) tasA 2604901..2605686 (-) 786 WP_017418136.1 biofilm matrix protein TasA -
  PF996_RS13255 (PF996_13255) sipW 2605751..2606335 (-) 585 WP_012117977.1 signal peptidase I SipW -
  PF996_RS13260 (PF996_13260) tapA 2606307..2606978 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  PF996_RS13265 (PF996_13265) - 2607237..2607566 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  PF996_RS13270 (PF996_13270) - 2607607..2607786 (-) 180 WP_003153093.1 YqzE family protein -
  PF996_RS13275 (PF996_13275) comGG 2607843..2608220 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  PF996_RS13280 (PF996_13280) comGF 2608221..2608616 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  PF996_RS13285 (PF996_13285) comGE 2608630..2608944 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  PF996_RS13290 (PF996_13290) comGD 2608928..2609365 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  PF996_RS13295 (PF996_13295) comGC 2609355..2609663 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  PF996_RS13300 (PF996_13300) comGB 2609668..2610705 (-) 1038 WP_014418377.1 competence type IV pilus assembly protein ComGB Machinery gene
  PF996_RS13305 (PF996_13305) comGA 2610692..2611762 (-) 1071 WP_106067891.1 competence type IV pilus ATPase ComGA Machinery gene
  PF996_RS13310 (PF996_13310) - 2611954..2612904 (-) 951 WP_071391609.1 magnesium transporter CorA family protein -
  PF996_RS13315 (PF996_13315) - 2613050..2614351 (+) 1302 WP_071181849.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11400.33 Da        Isoelectric Point: 6.4507

>NTDB_id=775271 PF996_RS13295 WP_014418376.1 2609355..2609663(-) (comGC) [Bacillus velezensis strain SRCM124633]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQRKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=775271 PF996_RS13295 WP_014418376.1 2609355..2609663(-) (comGC) [Bacillus velezensis strain SRCM124633]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCGTAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

76.289

95.098

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402