Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   PF986_RS12630 Genome accession   NZ_CP116013
Coordinates   2576866..2577555 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM124349     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2571866..2582555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS12595 (PF986_12595) - 2572064..2572546 (-) 483 WP_031379255.1 flagellar protein FlgN -
  PF986_RS12600 (PF986_12600) flgM 2572561..2572827 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF986_RS12605 (PF986_12605) - 2572897..2573316 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF986_RS12610 (PF986_12610) comFC 2573390..2574079 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  PF986_RS12615 (PF986_12615) - 2574085..2574369 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  PF986_RS12620 (PF986_12620) comFA 2574427..2575812 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  PF986_RS12625 (PF986_12625) - 2575920..2576768 (-) 849 WP_003151387.1 DegV family protein -
  PF986_RS12630 (PF986_12630) degU 2576866..2577555 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF986_RS12635 (PF986_12635) degS 2577632..2578795 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  PF986_RS12640 (PF986_12640) - 2579018..2579665 (+) 648 WP_060657503.1 YigZ family protein -
  PF986_RS12645 (PF986_12645) - 2579670..2580863 (+) 1194 WP_128974134.1 LCP family protein -
  PF986_RS12650 (PF986_12650) - 2580963..2582039 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=775205 PF986_RS12630 WP_003219701.1 2576866..2577555(-) (degU) [Bacillus velezensis strain SRCM124349]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=775205 PF986_RS12630 WP_003219701.1 2576866..2577555(-) (degU) [Bacillus velezensis strain SRCM124349]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1