Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PF986_RS12620 Genome accession   NZ_CP116013
Coordinates   2574427..2575812 (-) Length   461 a.a.
NCBI ID   WP_104842867.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2569427..2580812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS12585 (PF986_12585) flgL 2569602..2570519 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  PF986_RS12590 (PF986_12590) flgK 2570531..2572048 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  PF986_RS12595 (PF986_12595) - 2572064..2572546 (-) 483 WP_031379255.1 flagellar protein FlgN -
  PF986_RS12600 (PF986_12600) flgM 2572561..2572827 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PF986_RS12605 (PF986_12605) - 2572897..2573316 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  PF986_RS12610 (PF986_12610) comFC 2573390..2574079 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  PF986_RS12615 (PF986_12615) - 2574085..2574369 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  PF986_RS12620 (PF986_12620) comFA 2574427..2575812 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  PF986_RS12625 (PF986_12625) - 2575920..2576768 (-) 849 WP_003151387.1 DegV family protein -
  PF986_RS12630 (PF986_12630) degU 2576866..2577555 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PF986_RS12635 (PF986_12635) degS 2577632..2578795 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  PF986_RS12640 (PF986_12640) - 2579018..2579665 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52578.00 Da        Isoelectric Point: 10.1372

>NTDB_id=775204 PF986_RS12620 WP_104842867.1 2574427..2575812(-) (comFA) [Bacillus velezensis strain SRCM124349]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQIPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=775204 PF986_RS12620 WP_104842867.1 2574427..2575812(-) (comFA) [Bacillus velezensis strain SRCM124349]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAATCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTCTCTGCTTTGTACGGCGGCAGCGAAGACAAAGGCCGCCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.609

99.783

0.625