Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   PF986_RS07295 Genome accession   NZ_CP116013
Coordinates   1574701..1575771 (-) Length   356 a.a.
NCBI ID   WP_106067891.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM124349     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1569701..1580771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF986_RS07245 (PF986_07245) sipW 1569760..1570344 (-) 585 WP_012117977.1 signal peptidase I SipW -
  PF986_RS07250 (PF986_07250) tapA 1570316..1570987 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  PF986_RS07255 (PF986_07255) - 1571246..1571575 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  PF986_RS07260 (PF986_07260) - 1571616..1571795 (-) 180 WP_003153093.1 YqzE family protein -
  PF986_RS07265 (PF986_07265) comGG 1571852..1572229 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  PF986_RS07270 (PF986_07270) comGF 1572230..1572625 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  PF986_RS07275 (PF986_07275) comGE 1572639..1572953 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  PF986_RS07280 (PF986_07280) comGD 1572937..1573374 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  PF986_RS07285 (PF986_07285) comGC 1573364..1573630 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  PF986_RS07290 (PF986_07290) comGB 1573677..1574714 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  PF986_RS07295 (PF986_07295) comGA 1574701..1575771 (-) 1071 WP_106067891.1 competence type IV pilus ATPase ComGA Machinery gene
  PF986_RS07300 (PF986_07300) - 1575963..1576913 (-) 951 WP_071391609.1 magnesium transporter CorA family protein -
  PF986_RS07305 (PF986_07305) - 1577059..1578360 (+) 1302 WP_070082114.1 hemolysin family protein -
  PF986_RS07310 (PF986_07310) - 1578398..1579228 (-) 831 WP_017418143.1 STAS domain-containing protein -
  PF986_RS07320 (PF986_07320) - 1579435..1579815 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  PF986_RS07325 (PF986_07325) - 1580052..1580297 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.90 Da        Isoelectric Point: 9.4729

>NTDB_id=775184 PF986_RS07295 WP_106067891.1 1574701..1575771(-) (comGA) [Bacillus velezensis strain SRCM124349]
MKNIETYSRNIINEAYTARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAVLLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=775184 PF986_RS07295 WP_106067891.1 1574701..1575771(-) (comGA) [Bacillus velezensis strain SRCM124349]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAATGAGGCCTATACAGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCTTTATTTCGGGGGGCGGGCGCCGTACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGACCGACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCAATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374