Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PF977_RS20560 Genome accession   NZ_CP116012
Coordinates   3878033..3879181 (-) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain SRCM124333     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3873033..3884181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS20530 (PF977_20530) yclO 3873751..3874698 (-) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -
  PF977_RS20535 (PF977_20535) ceuB 3874691..3875641 (-) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  PF977_RS20540 (PF977_20540) thrD 3876026..3877390 (+) 1365 WP_015715246.1 aspartate kinase -
  PF977_RS20545 (PF977_20545) yczN 3877543..3877656 (+) 114 WP_014478831.1 YjcZ family sporulation protein -
  PF977_RS20550 (PF977_20550) yczM 3877738..3877827 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  PF977_RS20555 (PF977_20555) phrC 3877927..3878049 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  PF977_RS20560 (PF977_20560) rapC 3878033..3879181 (-) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  PF977_RS20565 (PF977_20565) yclK 3879344..3880765 (-) 1422 WP_074794501.1 two-component system sensor histidine kinase YclK -
  PF977_RS20570 (PF977_20570) yclJ 3880752..3881435 (-) 684 WP_003246532.1 two-component system response regulator YclJ -
  PF977_RS20575 (PF977_20575) yclI 3881647..3883107 (+) 1461 WP_015715243.1 ABC transporter permease -
  PF977_RS20580 (PF977_20580) yclH 3883123..3883803 (+) 681 WP_014662766.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=775142 PF977_RS20560 WP_014475800.1 3878033..3879181(-) (rapC) [Bacillus subtilis strain SRCM124333]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=775142 PF977_RS20560 WP_014475800.1 3878033..3879181(-) (rapC) [Bacillus subtilis strain SRCM124333]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAGTGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCATACTACAATCTCGGGTTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568