Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   PF977_RS08820 Genome accession   NZ_CP116012
Coordinates   1686244..1686579 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM124333     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681244..1691579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS08770 (PF977_08770) comGC 1681263..1681559 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  PF977_RS08775 (PF977_08775) comGD 1681549..1681980 (+) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  PF977_RS08780 (PF977_08780) comGE 1681964..1682311 (+) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  PF977_RS08785 (PF977_08785) comGF 1682337..1682720 (+) 384 WP_038429292.1 ComG operon protein ComGF Machinery gene
  PF977_RS08790 (PF977_08790) comGG 1682721..1683095 (+) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  PF977_RS08795 (PF977_08795) spoIITA 1683166..1683345 (+) 180 WP_014480252.1 YqzE family protein -
  PF977_RS08800 (PF977_08800) yqzG 1683387..1683713 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  PF977_RS08805 (PF977_08805) tapA 1683985..1684746 (+) 762 WP_015714251.1 amyloid fiber anchoring/assembly protein TapA -
  PF977_RS08810 (PF977_08810) sipW 1684730..1685302 (+) 573 WP_003230181.1 signal peptidase I SipW -
  PF977_RS08815 (PF977_08815) tasA 1685366..1686151 (+) 786 WP_015714250.1 biofilm matrix protein TasA -
  PF977_RS08820 (PF977_08820) sinR 1686244..1686579 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  PF977_RS08825 (PF977_08825) sinI 1686613..1686786 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  PF977_RS08830 (PF977_08830) yqhG 1686969..1687763 (-) 795 WP_015714249.1 YqhG family protein -
  PF977_RS08835 (PF977_08835) hepAA 1687784..1689457 (-) 1674 WP_003230203.1 DEAD/DEAH box helicase -
  PF977_RS08840 (PF977_08840) gcvT 1689899..1690987 (+) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=775110 PF977_RS08820 WP_003226345.1 1686244..1686579(-) (sinR) [Bacillus subtilis strain SRCM124333]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=775110 PF977_RS08820 WP_003226345.1 1686244..1686579(-) (sinR) [Bacillus subtilis strain SRCM124333]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1