Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   PF977_RS08760 Genome accession   NZ_CP116012
Coordinates   1679155..1680225 (+) Length   356 a.a.
NCBI ID   WP_015714258.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM124333     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1674155..1685225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS08725 (PF977_08725) yqgY 1674349..1674594 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  PF977_RS08730 (PF977_08730) mgsR 1674826..1675206 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  PF977_RS08740 (PF977_08740) rsbRD 1675430..1676266 (+) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  PF977_RS08745 (PF977_08745) yqhB 1676319..1677647 (-) 1329 WP_003230150.1 hemolysin family protein -
  PF977_RS08750 (PF977_08750) corA 1677790..1678743 (+) 954 WP_004399136.1 magnesium transporter CorA -
  PF977_RS08755 (PF977_08755) - 1678745..1678942 (+) 198 WP_014480259.1 CBS domain-containing protein -
  PF977_RS08760 (PF977_08760) comGA 1679155..1680225 (+) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  PF977_RS08765 (PF977_08765) comGB 1680212..1681249 (+) 1038 WP_015714257.1 comG operon protein ComGB Machinery gene
  PF977_RS08770 (PF977_08770) comGC 1681263..1681559 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  PF977_RS08775 (PF977_08775) comGD 1681549..1681980 (+) 432 WP_015714255.1 comG operon protein ComGD Machinery gene
  PF977_RS08780 (PF977_08780) comGE 1681964..1682311 (+) 348 WP_015714254.1 ComG operon protein 5 Machinery gene
  PF977_RS08785 (PF977_08785) comGF 1682337..1682720 (+) 384 WP_038429292.1 ComG operon protein ComGF Machinery gene
  PF977_RS08790 (PF977_08790) comGG 1682721..1683095 (+) 375 WP_015714252.1 ComG operon protein ComGG Machinery gene
  PF977_RS08795 (PF977_08795) spoIITA 1683166..1683345 (+) 180 WP_014480252.1 YqzE family protein -
  PF977_RS08800 (PF977_08800) yqzG 1683387..1683713 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  PF977_RS08805 (PF977_08805) tapA 1683985..1684746 (+) 762 WP_015714251.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40488.67 Da        Isoelectric Point: 9.0175

>NTDB_id=775103 PF977_RS08760 WP_015714258.1 1679155..1680225(+) (comGA) [Bacillus subtilis strain SRCM124333]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=775103 PF977_RS08760 WP_015714258.1 1679155..1680225(+) (comGA) [Bacillus subtilis strain SRCM124333]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCACAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCACTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997