Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QU520_RS09375 Genome accession   NZ_CP128613
Coordinates   1945137..1945793 (+) Length   218 a.a.
NCBI ID   WP_000611332.1    Uniprot ID   -
Organism   Escherichia coli strain WL297     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940137..1950793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU520_RS09345 (QU520_09345) dcyD 1941017..1942003 (+) 987 WP_001128207.1 D-cysteine desulfhydrase -
  QU520_RS09350 (QU520_09350) tcyL 1942018..1942686 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  QU520_RS09355 (QU520_09355) tcyN 1942683..1943435 (+) 753 WP_001272993.1 L-cystine ABC transporter ATP-binding protein TcyN -
  QU520_RS09360 (QU520_09360) sdiA 1943665..1944387 (+) 723 WP_001154281.1 transcriptional regulator SdiA -
  QU520_RS09365 (QU520_09365) yecF 1944454..1944678 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  QU520_RS09370 (QU520_09370) yecU 1944665..1944841 (-) 177 WP_001302050.1 protein YecU -
  QU520_RS24450 - 1944879..1944995 (-) 117 WP_001302039.1 hypothetical protein -
  QU520_RS09375 (QU520_09375) letA 1945137..1945793 (+) 657 WP_000611332.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QU520_RS09380 (QU520_09380) uvrC 1945790..1947622 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  QU520_RS09385 (QU520_09385) pgsA 1947679..1948227 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QU520_RS09405 (QU520_09405) yecA 1948876..1949541 (+) 666 WP_289787440.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.63 Da        Isoelectric Point: 6.9614

>NTDB_id=775102 QU520_RS09375 WP_000611332.1 1945137..1945793(+) (letA) [Escherichia coli strain WL297]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRSNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=775102 QU520_RS09375 WP_000611332.1 1945137..1945793(+) (letA) [Escherichia coli strain WL297]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGTCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTAAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482