Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PF977_RS08485 Genome accession   NZ_CP116012
Coordinates   1630594..1631361 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain SRCM124333     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1625594..1636361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS08455 (PF977_08455) pgpH 1625890..1628025 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  PF977_RS08460 (PF977_08460) ybeY 1628026..1628499 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  PF977_RS08465 (PF977_08465) unpK 1628480..1628851 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  PF977_RS08470 (PF977_08470) - 1628970..1629380 (+) 411 WP_003230049.1 cytidine deaminase -
  PF977_RS08475 (PF977_08475) era 1629361..1630266 (+) 906 WP_003230051.1 GTPase Era -
  PF977_RS08480 (PF977_08480) yqzL 1630414..1630557 (+) 144 WP_003230053.1 YqzL family protein -
  PF977_RS08485 (PF977_08485) recO 1630594..1631361 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  PF977_RS08490 (PF977_08490) glyQ 1631659..1632546 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  PF977_RS08495 (PF977_08495) glyS 1632539..1634578 (+) 2040 WP_015714279.1 glycine--tRNA ligase subunit beta -
  PF977_RS08500 (PF977_08500) ccpN 1634711..1635349 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  PF977_RS08505 (PF977_08505) ppsR 1635375..1636187 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=775102 PF977_RS08485 WP_003230055.1 1630594..1631361(+) (recO) [Bacillus subtilis strain SRCM124333]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=775102 PF977_RS08485 WP_003230055.1 1630594..1631361(+) (recO) [Bacillus subtilis strain SRCM124333]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1